Miyakogusa Predicted Gene

Lj1g3v1697880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1697880.1 tr|C4T9C1|C4T9C1_LOTJA SLEEPY1a OS=Lotus
japonicus GN=SLY1a PE=2 SV=1,100,4e-17,seg,NULL,CUFF.27690.1
         (104 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24210.1 | Symbols: SLY1 | F-box family protein | chr4:125636...    57   3e-09

>AT4G24210.1 | Symbols: SLY1 | F-box family protein |
           chr4:12563658-12564113 FORWARD LENGTH=151
          Length = 151

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 48/116 (41%), Gaps = 51/116 (43%)

Query: 39  GLGCFDDNLLFEVLKHVDAKSL---------------------------WGPIPP----- 66
           G    D+NL++EVLKHVDAK+L                           W  I       
Sbjct: 31  GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQL 90

Query: 67  -------------------PVIRSKPLPRLGKDEVHLSLSLLSIRYYEKMNFNNRP 103
                              P+ +  P  R GKDE+ L+LSLLSIRYYEKM+F  RP
Sbjct: 91  RSVVLALGGFRRLHSLYLWPLSKPNPRARFGKDELKLTLSLLSIRYYEKMSFTKRP 146