Miyakogusa Predicted Gene

Lj1g3v1650140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1650140.1 Non Chatacterized Hit- tr|D7KXQ9|D7KXQ9_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,75.61,0.00000000002,seg,NULL; SUBFAMILY NOT NAMED,NULL;
THIOREDOXIN-RELATED,Thioredoxin;
Thioredoxin-like,Thioredoxin-li,CUFF.27639.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07700.1 | Symbols:  | Thioredoxin superfamily protein | chr1...   203   6e-53
AT1G07700.3 | Symbols:  | Thioredoxin superfamily protein | chr1...   202   1e-52
AT1G07700.2 | Symbols:  | Thioredoxin superfamily protein | chr1...   153   1e-37
AT3G51030.1 | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-ty...    60   2e-09
AT4G26160.1 | Symbols: ACHT1 | atypical CYS  HIS rich thioredoxi...    57   6e-09
AT5G42980.1 | Symbols: ATTRX3, ATH3, ATTRXH3, TRXH3, TRX3 | thio...    56   1e-08
AT4G29670.2 | Symbols: ACHT2 | atypical CYS  HIS rich thioredoxi...    56   2e-08
AT4G29670.1 | Symbols: ACHT2 | atypical CYS  HIS rich thioredoxi...    56   2e-08
AT1G45145.1 | Symbols: ATTRX5, ATH5, LIV1, TRX5 | thioredoxin H-...    54   8e-08
AT1G19730.1 | Symbols: ATTRX4, ATH4 | Thioredoxin superfamily pr...    50   9e-07

>AT1G07700.1 | Symbols:  | Thioredoxin superfamily protein |
           chr1:2380214-2381127 FORWARD LENGTH=204
          Length = 204

 Score =  203 bits (517), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 111/124 (89%)

Query: 85  VCPVECVREFKTDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHD 144
           +CPVECV EFKTD+E   +L+K+K   SLVVVDF+RT+CGSCKYIEQGF+KLC++SG+ +
Sbjct: 81  LCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQE 140

Query: 145 APVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGILLEAFPTRDKARIVEAILKYS 204
           APVIFLKHNV+DEYDE+SEVAERLRI+AVPLFHFYK+G+LLE+F TRDK RI  AILKY+
Sbjct: 141 APVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYT 200

Query: 205 SLEA 208
           S E+
Sbjct: 201 SSES 204


>AT1G07700.3 | Symbols:  | Thioredoxin superfamily protein |
           chr1:2380297-2381127 FORWARD LENGTH=217
          Length = 217

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 111/124 (89%)

Query: 85  VCPVECVREFKTDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHD 144
           +CPVECV EFKTD+E   +L+K+K   SLVVVDF+RT+CGSCKYIEQGF+KLC++SG+ +
Sbjct: 94  LCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQE 153

Query: 145 APVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGILLEAFPTRDKARIVEAILKYS 204
           APVIFLKHNV+DEYDE+SEVAERLRI+AVPLFHFYK+G+LLE+F TRDK RI  AILKY+
Sbjct: 154 APVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYT 213

Query: 205 SLEA 208
           S E+
Sbjct: 214 SSES 217


>AT1G07700.2 | Symbols:  | Thioredoxin superfamily protein |
           chr1:2380214-2380939 FORWARD LENGTH=171
          Length = 171

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 66/91 (72%), Positives = 82/91 (90%)

Query: 85  VCPVECVREFKTDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHD 144
           +CPVECV EFKTD+E   +L+K+K   SLVVVDF+RT+CGSCKYIEQGF+KLC++SG+ +
Sbjct: 81  LCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQE 140

Query: 145 APVIFLKHNVIDEYDEESEVAERLRIRAVPL 175
           APVIFLKHNV+DEYDE+SEVAERLRI+ +PL
Sbjct: 141 APVIFLKHNVVDEYDEQSEVAERLRIKVIPL 171


>AT3G51030.1 | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type
           1 | chr3:18951123-18951955 REVERSE LENGTH=114
          Length = 114

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 96  TDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHDAPVIFLKHNVI 155
           T E + + L KA  + +LVVVDF  + CG C++I   FA L +K  N    V+FLK +  
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDT- 67

Query: 156 DEYDEESEVAERLRIRAVPLFHFYKDGILLEAFPTRDKARIVEAILKY 203
              DE   VA    I+A+P F F K+G +L+      K  +   I K+
Sbjct: 68  ---DELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112


>AT4G26160.1 | Symbols: ACHT1 | atypical CYS  HIS rich thioredoxin 1
           | chr4:13255296-13256632 FORWARD LENGTH=221
          Length = 221

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 11/84 (13%)

Query: 102 KILDKAKRAGS-LVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHDAPVIFLKHNVIDEYDE 160
           + L+  K AG  LV+VDF+ T CGSC+ +   F KLC+ +  H   ++FLK N    +DE
Sbjct: 103 QFLNALKDAGDRLVIVDFYGTWCGSCRAM---FPKLCKTAKEHPN-ILFLKVN----FDE 154

Query: 161 ESEVAERLRIRAVPLFHFYK--DG 182
              + + L ++ +P FHFY+  DG
Sbjct: 155 NKSLCKSLNVKVLPYFHFYRGADG 178


>AT5G42980.1 | Symbols: ATTRX3, ATH3, ATTRXH3, TRXH3, TRX3 |
           thioredoxin 3 | chr5:17242772-17243718 FORWARD
           LENGTH=118
          Length = 118

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query: 96  TDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHDAPVIFLKHNVI 155
           T E++ + L  A  +  L+V+DF  T C  C++I   FA L +K  +    V+F K +V 
Sbjct: 12  TVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLD----VVFFKVDV- 66

Query: 156 DEYDEESEVAERLRIRAVPLFHFYKDGILLEAFPTRDKARIVEAILKYSSLEA 208
              DE + VAE  +++A+P F F K+G + E      K  I+  + K+ ++ A
Sbjct: 67  ---DELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVA 116


>AT4G29670.2 | Symbols: ACHT2 | atypical CYS  HIS rich thioredoxin 2
           | chr4:14535983-14537108 REVERSE LENGTH=236
          Length = 236

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 13/95 (13%)

Query: 96  TDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHDAPVIFLKHNVI 155
           + EEF   L  A     LV+V+F+ T C SC+ +   F KLC+ +  H   ++FLK N  
Sbjct: 110 STEEFLSALSGA--GERLVIVEFYGTWCASCRAL---FPKLCKTAVEHPD-IVFLKVN-- 161

Query: 156 DEYDEESEVAERLRIRAVPLFHFYK--DGILLEAF 188
             +DE   + + L +R +P FHFY+  DG  LE+F
Sbjct: 162 --FDENKPMCKSLNVRVLPFFHFYRGADG-QLESF 193


>AT4G29670.1 | Symbols: ACHT2 | atypical CYS  HIS rich thioredoxin 2
           | chr4:14535772-14537108 REVERSE LENGTH=235
          Length = 235

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 13/95 (13%)

Query: 96  TDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHDAPVIFLKHNVI 155
           + EEF   L  A     LV+V+F+ T C SC+ +   F KLC+ +  H   ++FLK N  
Sbjct: 110 STEEFLSALSGA--GERLVIVEFYGTWCASCRAL---FPKLCKTAVEHPD-IVFLKVN-- 161

Query: 156 DEYDEESEVAERLRIRAVPLFHFYK--DGILLEAF 188
             +DE   + + L +R +P FHFY+  DG  LE+F
Sbjct: 162 --FDENKPMCKSLNVRVLPFFHFYRGADG-QLESF 193


>AT1G45145.1 | Symbols: ATTRX5, ATH5, LIV1, TRX5 | thioredoxin
           H-type 5 | chr1:17075264-17076256 REVERSE LENGTH=118
          Length = 118

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 8/102 (7%)

Query: 107 AKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHDAPVIFLKHNVIDEYDEESEVAE 166
           A  +  L+V+DF  + C  C++I   FA++ +K  N    V+F K +V    DE   VA+
Sbjct: 23  ANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTN----VVFFKIDV----DELQAVAQ 74

Query: 167 RLRIRAVPLFHFYKDGILLEAFPTRDKARIVEAILKYSSLEA 208
             ++ A+P F F K+G +++      K  I E ++K+  L A
Sbjct: 75  EFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVA 116


>AT1G19730.1 | Symbols: ATTRX4, ATH4 | Thioredoxin superfamily
           protein | chr1:6823163-6824020 REVERSE LENGTH=119
          Length = 119

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 7/111 (6%)

Query: 96  TDEEFCKILDKAKRAGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGNHDAPVIFLKHNVI 155
           T++ +   LDKAK +  L+V+DF  + C  C+ I   F  L +K     +  IF K +V 
Sbjct: 13  TNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKK---FMSSAIFFKVDV- 68

Query: 156 DEYDEESEVAERLRIRAVPLFHFYKDGILLEAFPTRDKARIVEAILKYSSL 206
              DE   VA+   + A+P F F K G +++     +K  +   I+K++ +
Sbjct: 69  ---DELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGV 116