Miyakogusa Predicted Gene

Lj1g3v0715520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0715520.1 Non Chatacterized Hit- tr|I0YKX0|I0YKX0_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,36.8,3e-18,seg,NULL,CUFF.26201.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   236   9e-63

>AT5G66090.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN: chloroplast,
           chloroplast stroma; EXPRESSED IN: 21 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:26425831-26426955 FORWARD LENGTH=210
          Length = 210

 Score =  236 bits (602), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 115/171 (67%), Positives = 138/171 (80%), Gaps = 4/171 (2%)

Query: 37  RAQNHSLAFTTLRRIINHKAKATPQEPE-VSAGAAIDAFTQFKHLLLPITDRNPYLSEGT 95
           R Q  SL    L+  +  +AK     P  V  G   DAF+  KHLLLP+ DRNPYLSEGT
Sbjct: 43  RQQLLSLRSVALKGRVKAQAKEAEASPSPVGVG---DAFSNVKHLLLPVIDRNPYLSEGT 99

Query: 96  RQAISTTTALAKKYGADITVVVIDEQQKESLPEHETQLSSIRWHISEGGFKDYNLLERLG 155
           RQA +TTT+LAKKYGADITVVVIDE+++ES  EHETQ+S+IRWH+SEGGF+++ LLERLG
Sbjct: 100 RQAAATTTSLAKKYGADITVVVIDEEKRESSSEHETQVSNIRWHLSEGGFEEFKLLERLG 159

Query: 156 EGSKPTAIIGDVADELNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL 206
           EG K TAIIG+VADEL ++LVV+SMEAIH+K+IDANLLAEFIPCPV+LLPL
Sbjct: 160 EGKKATAIIGEVADELKMELVVMSMEAIHSKYIDANLLAEFIPCPVLLLPL 210