Miyakogusa Predicted Gene
- Lj1g3v0129840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0129840.1 Non Chatacterized Hit- tr|D7TCR3|D7TCR3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,54.67,0.000000000000001,RNA recognition motif,RNA recognition
motif domain; FAMILY NOT NAMED,NULL; no
description,Nucleotide,NODE_57968_length_468_cov_82.553421.path1.1
(86 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 87 2e-18
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 78 1e-15
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 70 2e-13
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 69 4e-13
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-12
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 66 5e-12
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 66 5e-12
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-11
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-11
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 8e-11
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 9e-11
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 9e-11
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 62 9e-11
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-11
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-11
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-10
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-10
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 4e-10
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 4e-10
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 4e-10
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 4e-10
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-10
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 59 5e-10
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 59 5e-10
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-10
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-10
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 59 8e-10
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 59 8e-10
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-09
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 57 2e-09
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 2e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 2e-09
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 3e-09
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 3e-09
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-09
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-09
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 53 3e-08
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-08
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-08
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-07
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-07
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-07
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 51 2e-07
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 51 2e-07
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 50 2e-07
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 50 2e-07
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 50 3e-07
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-07
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-07
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 50 3e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-07
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 6e-07
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-07
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 49 7e-07
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 49 7e-07
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-07
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-07
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 8e-07
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 8e-07
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 49 8e-07
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 1e-06
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 1e-06
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 1e-06
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 1e-06
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 1e-06
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 48 1e-06
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 48 1e-06
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-06
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-06
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-06
AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 48 2e-06
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 48 2e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 47 2e-06
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 47 2e-06
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 47 2e-06
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 47 2e-06
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 47 2e-06
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 47 2e-06
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 3e-06
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 3e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 47 3e-06
AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 46 5e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 6e-06
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 45 8e-06
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 45 8e-06
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 63/82 (76%)
Query: 3 LSKLQHASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRS 62
L++ + S + L F R+ +S +FVKG++FS+TE+ L +AFSQYG+VLK D+++++ + R
Sbjct: 2 LTQFLYRSFTPLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRP 61
Query: 63 KGFGYVTFAKEEDAQKAQIGMN 84
KGF YVTF+ +E+A+KA + +N
Sbjct: 62 KGFAYVTFSSKEEAEKALLELN 83
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 51/67 (76%)
Query: 18 RTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQ 77
R + SK+F+ GL+F TTE L+EAFS+ G+V++A IV++R RSKGFG+VTFA ++AQ
Sbjct: 30 RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89
Query: 78 KAQIGMN 84
KA + N
Sbjct: 90 KALMEFN 96
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein
3 | chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 9 ASPSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGY 67
+SPS +R M+S K+F+ G+A+S ED L EAF++YG+V+ ++L+R RS+GFG+
Sbjct: 26 SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGF 85
Query: 68 VTFAKEEDAQKA 79
VTF E A A
Sbjct: 86 VTFTSSEAASSA 97
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein
5 | chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 9 ASPSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGY 67
AS S L +R M+S KIFV G+++ST E L EAFS+YG+V+ A I+++R RS+GF +
Sbjct: 20 ASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAF 79
Query: 68 VTFAKEEDAQKA 79
VTF E+A A
Sbjct: 80 VTFTSTEEASNA 91
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 19 TMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQ 77
T+TS ++FV GL+ TT +KL +AF+ +G+++ A ++ +R RSKGFG+VT+A EDA+
Sbjct: 30 TLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAE 89
Query: 78 KAQIGMNRK 86
KA+ MN K
Sbjct: 90 KAKAEMNAK 98
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 12 SQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S L LR M+SK+FV GL++ T + L +AF+ +G+V +A ++ +R RS+GFG+V+F+
Sbjct: 25 SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
Query: 72 KEEDAQKA 79
E+ A A
Sbjct: 85 CEDSANNA 92
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 12 SQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S L LR M+SK+FV GL++ T + L +AF+ +G+V +A ++ +R RS+GFG+V+F+
Sbjct: 25 SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
Query: 72 KEEDAQKA 79
E+ A A
Sbjct: 85 CEDSANNA 92
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 15 PFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
PF T +K+FV GLA+ T + L + F QYG++L+A ++ ++ RSKG+G+VTF E
Sbjct: 17 PFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPE 76
Query: 75 DAQKA 79
A++A
Sbjct: 77 AARRA 81
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 20 MTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
M ++++V L+ +TT+D L EAFS YG V+ A ++ +R RS+GFG+VT++ +A+ A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 80 QIGMNRK 86
GM+ K
Sbjct: 61 VSGMDGK 67
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
2 | chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 12 SQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S L LR M++K+F+ GL++ T + L +AF+ +G V+ A ++++R RS+GFG+V F
Sbjct: 25 SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Query: 72 KEEDAQKAQIGMNRK 86
E A A M+ K
Sbjct: 85 DEGAATAAISEMDGK 99
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
2 | chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 12 SQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S L LR M++K+F+ GL++ T + L +AF+ +G V+ A ++++R RS+GFG+V F
Sbjct: 25 SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Query: 72 KEEDAQKAQIGMNRK 86
E A A M+ K
Sbjct: 85 DEGAATAAISEMDGK 99
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
2 | chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 12 SQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S L LR M++K+F+ GL++ T + L +AF+ +G V+ A ++++R RS+GFG+V F
Sbjct: 25 SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Query: 72 KEEDAQKAQIGMNRK 86
E A A M+ K
Sbjct: 85 DEGAATAAISEMDGK 99
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 12 SQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S L LR M++K+F+ GL++ T + L +AF+ +G V+ A ++++R RS+GFG+V F
Sbjct: 25 SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Query: 72 KEEDAQKAQIGMNRK 86
E A A M+ K
Sbjct: 85 DEGAATAAISEMDGK 99
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 61.6 bits (148), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 15 PFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
PF T +K+FV GLA+ T + L F QYG +L+A ++ ++ RSKG+G+VTF E
Sbjct: 17 PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPE 76
Query: 75 DAQKA 79
A++A
Sbjct: 77 AARRA 81
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 61.6 bits (148), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 15 PFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
PF T +K+FV GLA+ T + L F QYG +L+A ++ ++ RSKG+G+VTF E
Sbjct: 17 PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPE 76
Query: 75 DAQKA 79
A++A
Sbjct: 77 AARRA 81
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
+K++V GL+F TTED L + F Q+G ++ ++V+++ R KGF ++ + EE+A KA
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 82 GMNRK 86
GM+ K
Sbjct: 137 GMHGK 141
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 6 LQHASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGF 65
+ + S + PF T +K+FV GLA+ T D++ F Q+G++L+A I+ ++A +SKG+
Sbjct: 1 MSNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60
Query: 66 GYVTFAKEEDAQKA 79
G+VTF + A +A
Sbjct: 61 GFVTFRDSDSATRA 74
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 7 QHASPSQLPFLRTMTS--------KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRA 58
QH+ S FL + K+F+ GL++S E L +AFS +G+V + I ++
Sbjct: 18 QHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKG 77
Query: 59 KTRSKGFGYVTFAKEEDAQKAQIGMNRK 86
RS+GFG+V FA+E DA A+ M+ K
Sbjct: 78 SGRSRGFGFVDFAEEGDALSAKDAMDGK 105
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +K+FV GLA+ T + L F Q+G +++A ++ +++ RSKG+G+VTF E AQK
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Query: 79 AQI 81
A +
Sbjct: 64 ACV 66
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +K+FV GLA+ T + L F Q+G +++A ++ +++ RSKG+G+VTF E AQK
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Query: 79 AQI 81
A +
Sbjct: 64 ACV 66
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 45/63 (71%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +K+FV GLA+ T ++ + + F Q+G++L+A ++ ++A RSKG+G+VTF + E A+
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARS 69
Query: 79 AQI 81
A +
Sbjct: 70 ACV 72
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 45/63 (71%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +K+FV GLA+ T ++ + + F Q+G++L+A ++ ++A RSKG+G+VTF + E A+
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARS 69
Query: 79 AQI 81
A +
Sbjct: 70 ACV 72
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 44/61 (72%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +K+FV GLA+ T ++ + + F Q+G++L+A ++ ++A RSKG+G+VTF + E A+
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARS 69
Query: 79 A 79
A
Sbjct: 70 A 70
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T + L AF+QYG V+ + I+ +R RS+GFG+VTF E+ + A G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 83 MN 84
MN
Sbjct: 69 MN 70
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T + L AF+QYG V+ + I+ +R RS+GFG+VTF E+ + A G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 83 MN 84
MN
Sbjct: 69 MN 70
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +KIFV GLA+ T D + F Q+G++++A ++ ++ RSKG+G+VTF + E A +
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Query: 79 AQIGMN 84
A MN
Sbjct: 79 ACQNMN 84
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 58.9 bits (141), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 6 LQHASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGF 65
+ S + PF T +K+FV GLA+ T D++ F Q+G++L+A I+ ++ +SKG+
Sbjct: 1 MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
Query: 66 GYVTFAKEEDAQKA 79
G+VTF + + A +A
Sbjct: 61 GFVTFRESDSATRA 74
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 12 SQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S L LR M++K+++ GL+ T E L +AFS + V +A ++ N+ RS+G+G+V F
Sbjct: 21 SMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFI 80
Query: 72 KEEDAQKAQIGMN 84
E+ A A MN
Sbjct: 81 SEDSANSAISAMN 93
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 15 PFLR----------TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKG 64
PFLR T + ++VK LA STT+D L AF +YGK+ A +V+ + +SKG
Sbjct: 198 PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKG 256
Query: 65 FGYVTFAKEEDAQKAQIGMN 84
FG+V F +DA +A +N
Sbjct: 257 FGFVNFENADDAARAVESLN 276
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 8 HASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGY 67
H PS R+ IF+K L S L + FS +G ++ + ++ + +SKG+G+
Sbjct: 113 HRDPS---VRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGF 168
Query: 68 VTFAKEEDAQKA 79
V +A EE AQKA
Sbjct: 169 VQYANEESAQKA 180
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 6 LQHASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGF 65
+ S + PF T +K+FV GLA+ T D++ F Q+G++L+A I+ ++ +SKG+
Sbjct: 1 MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
Query: 66 GYVTFAKEEDAQKA 79
G+VTF + + A +A
Sbjct: 61 GFVTFRESDSATRA 74
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 17 LRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
L SKIFV GL+ ST + L EAF +GK++ A +VL+R S+GFG+VT+ E A
Sbjct: 31 LSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVA 90
Query: 77 QKAQIGMNRK 86
A M K
Sbjct: 91 NNAMQAMQNK 100
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQ 80
++ +FV GL+ TT + L AF+Q+G+V A +V +R SKGFG+V +A ED+ K
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114
Query: 81 IGMNRK 86
GM+ K
Sbjct: 115 AGMDGK 120
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T ++ L FSQ+G V+ + I+ +R RS+GFG+VTF E+ + A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 83 MNRK 86
MN K
Sbjct: 67 MNGK 70
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T ++ L FSQ+G V+ + I+ +R RS+GFG+VTF E+ + A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 83 MNRK 86
MN K
Sbjct: 67 MNGK 70
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T ++ L FSQ+G V+ + I+ +R RS+GFG+VTF E+ + A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 83 MNRK 86
MN K
Sbjct: 67 MNGK 70
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T ++ L FSQ+G V+ + I+ +R RS+GFG+VTF E+ + A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 83 MN 84
MN
Sbjct: 67 MN 68
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 25 FVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGMN 84
FVKG + S +E +L + FS++G+V I+ N +S G+GYV F +EDAQ A MN
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 85 RK 86
K
Sbjct: 121 GK 122
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 25 FVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGMN 84
FVKG + S +E +L + FS++G+V I+ N +S G+GYV F +EDAQ A MN
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 85 RK 86
K
Sbjct: 140 GK 141
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 42/58 (72%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ K+F+ G+++ T+ED+L + F +G+VL+A I+ +RA R++GFG+V FA A++
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ KIFV GLA S TE + + F+Q+G + ++ + R +GFG++++ EE K
Sbjct: 127 SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 184
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F + SKI V+ L FST+ED L FS +G++ + ++ + A RSKG+ ++ F ++D
Sbjct: 34 FNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDD 93
Query: 76 AQKAQIGMNRK 86
A A M+R+
Sbjct: 94 AFLAIETMDRR 104
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
T KIFV G+ + TED+L + F++YG V++ ++ + RS+GFG+V F EE
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 20 MTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+ S+IFV GL++ TE +L F +YGK+ + I++ R R +GFG++TF A A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 20 MTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+ S+IFV GL++ TE +L F +YGK+ + I++ R R +GFG++TF A A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 42/58 (72%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ K+F+ G+++ T+ED+L + F +G+VL+A I+ +RA R++GFG+V FA A++
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ KIFV GLA S TE + + F+Q+G + ++ + R +GFG++++ EE K
Sbjct: 105 SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 162
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 42/58 (72%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ K+F+ G+++ T+ED+L + F +G+VL+A I+ +RA R++GFG+V FA A++
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ KIFV GLA S TE + + F+Q+G + ++ + R +GFG++++ EE K
Sbjct: 105 SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 162
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +KI+V GL ++T ++ L F ++G+++ ++V +R RS+G+G+VTF E A +
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATR 69
Query: 79 A 79
A
Sbjct: 70 A 70
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 17 LRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
+++ K+F+ G+++ T E++L E FS +G+V++A I+ +R R++GFG+V FA D
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA---DP 57
Query: 77 QKAQIGMNRK 86
A+I + K
Sbjct: 58 AVAEIVITEK 67
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 17 LRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
+++ K+F+ G+++ T E++L E FS +G+V++A I+ +R R++GFG+V FA D
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA---DP 57
Query: 77 QKAQIGMNRK 86
A+I + K
Sbjct: 58 AVAEIVITEK 67
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +KI+V GL + T + L F Q+G ++ ++V +R RS+G+G+VTF E A +
Sbjct: 49 TRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATR 108
Query: 79 A 79
A
Sbjct: 109 A 109
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 37/49 (75%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+F+ G+++ T E++L + FS YG V++A I+ +RA R++GFG++ FA
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 37/49 (75%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+F+ G+++ T E++L + FS YG V++A I+ +RA R++GFG++ FA
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 37/49 (75%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+F+ G+++ T E++L + FS YG V++A I+ +RA R++GFG++ FA
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 37/49 (75%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+F+ G+++ T E++L + FS YG V++A I+ +RA R++GFG++ FA
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 44/62 (70%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ F+ GLA++T++ L +AF +YG +++A +VL++ RS+GFG++TF +++ +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 83 MN 84
MN
Sbjct: 68 MN 69
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F T +K+FV GLA+ T ++ + + F +YG +L+A I+ ++ RSKG+G+VTF +
Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70
Query: 76 AQKA 79
A +A
Sbjct: 71 ATRA 74
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
T KIFV G+ + TED+L + F++YG V++ ++ + RS+GFG+V F EE
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
IFV+GL + TT + L AF YG++ + +V+++ R+KGFG+V F + A+ A
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
S+IFV GL+ T+ L AFS++G +L I+L R RS+GFG++TFA
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFA 56
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+KI+V GL + T + L F ++G+++ A +V + A RSKGFG+VTF + E A +A
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
K++V LA + T++ L FS+ GKV+ A + ++S GFG+VTF+ EED + A +
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 83 MN 84
+N
Sbjct: 238 LN 239
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
K++V LA + T++ L FS+ GKV+ A + ++S GFG+VTF+ EED + A +
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 83 MN 84
+N
Sbjct: 238 LN 239
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQ 80
T K+F+ GL+F T+E L AF +G++++ I++++ RSKG+ ++ + EE A A
Sbjct: 281 TKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTAL 340
Query: 81 IGMNRK 86
MN K
Sbjct: 341 KEMNGK 346
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 39/56 (69%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
K+F+ G+++ T E++L E F +YG +++A I+ +R R++GFG++ FA A++
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 39/56 (69%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
K+F+ G+++ T E++L E F +YG +++A I+ +R R++GFG++ FA A++
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
K+FV G+A T+E+ L + FS+YG VL+A + + + +GFG+V FA + D KA
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTF 70
T +KIFV L + TT D L F Q+G+V+ A++V RSKG+G++TF
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + TT + L F YG++ + +V+++A ++KGFG+V F + A++A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + TT + L F YG++ + +V+++A ++KGFG+V F + A++A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
+ ++VK L+ +TT+D+L F QYG + A +V+ +S+ FG+V F EDA +A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSA-VVMRDGDGKSRCFGFVNFENPEDAARAVE 283
Query: 82 GMNRK 86
+N K
Sbjct: 284 ALNGK 288
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F ++ + +++K L S ++KL E FS+YG V + ++LN + S+GFG+V ++ E+
Sbjct: 326 FEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEE 384
Query: 76 AQKAQIGMNRK 86
A +A MN K
Sbjct: 385 ALRALSEMNGK 395
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
IF+K L S L E FS +G +L + ++ RSKG+G+V F KEE AQ A
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAA 192
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
K+F++GLA TT + L FS YG + +A ++L++ +SKG+G+VTF + A
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
K+F++GLA TT + L FS YG + +A ++L++ +SKG+G+VTF + A
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
++ ++VK L + T+D L FSQYG V + +V+ RS+GFG+V F E+A+KA
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTV-SSVVVMRDGMGRSRGFGFVNFCNPENAKKA 258
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
S ++VK L+ S E +L E F YG+++ A ++ + RSKGFG+V F+ E++++A+
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKR 362
Query: 82 GMN 84
+N
Sbjct: 363 YLN 365
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 20 MTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+++++FV L+ TT+ L + FS +G++ +A ++ + R KGFG++TF E+DA+KA
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 24 IFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
IFV+G + TT++ L AF YG++ + +V+++ R KG+G+V F + A++A
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+FV G+++ T EDKL E F+ YG+V +A ++ ++ R +GFG+V F+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFS 55
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F + S +++K L S ++KL E FS+YG V +++N ++ S+GFG+V ++ E+
Sbjct: 336 FEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEE 394
Query: 76 AQKAQIGMNRK 86
A A MN K
Sbjct: 395 ALLAMKEMNGK 405
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F + S +++K L S ++KL E FS+YG V +++N ++ S+GFG+V ++ E+
Sbjct: 336 FEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEE 394
Query: 76 AQKAQIGMNRK 86
A A MN K
Sbjct: 395 ALLAMKEMNGK 405
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 20 MTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
M K+ V G+ + D L + S++G + ++ +R+ RS+GFGYVTFA EDA+ A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 80 QIG 82
G
Sbjct: 61 LKG 63
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 20 MTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
M K+ V G+ + D L + S++G + ++ +R+ RS+GFGYVTFA EDA+ A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 80 QIG 82
G
Sbjct: 61 LKG 63
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + T D L +AF QYG++ V+++ +SKG+G++ F A+ A
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + T D L +AF QYG++ V+++ +SKG+G++ F A+ A
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
T ++FV+ L ++ TE++L E FS +GK+ + +VL++ RS+G Y+ + E A +A
Sbjct: 293 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 351
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + T + L EAF QYG++ V ++ +SKG+G++ + A+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + T + L EAF QYG++ V ++ +SKG+G++ + A+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + T + L EAF QYG++ V ++ +SKG+G++ + A+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + T + L EAF QYG++ V ++ +SKG+G++ + A+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + T + L EAF QYG++ V ++ +SKG+G++ + A+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 24 IFVKGLAFSTTEDKLAEAFSQ-YGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
IFV LA T+ L++ F YG V A +VL+R RSKG+G+V FA E + +A
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 83 MN 84
MN
Sbjct: 216 MN 217
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 24 IFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGM 83
+ V L+ + E L E F +G+V+ +I ++RA +G GYV F DA+KAQ+ M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 84 N 84
+
Sbjct: 160 D 160
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
++++V L++ + L FS+ GKV++A ++ +R RSKGFG+VT+ ++ Q A
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
T KIFV G+ S +D+ E F Q+G++ + I+ + + RS+GFG+VT+ E+
Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 24 IFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+ V GL +S T +L EAFS+ G V + +V N+ +GF +V FA +ED +A
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRA 77
>AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=414
Length = 414
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 24 IFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGM 83
+ V L+ + E L E F +G+V+ +I ++RA +G GYV F DA+KAQ+ M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 84 N 84
+
Sbjct: 160 D 160
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
+K+FV LA+ LA F Q G V A+++ NR +S+GFG+VT + ++A+ A
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 82 GMNR 85
NR
Sbjct: 210 KFNR 213
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 9 ASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYV 68
+ P + P + +++V L + +L + FS++GKV++A +V +R RS+GFG+V
Sbjct: 231 SRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290
Query: 69 TFAKEEDAQKA 79
T + ++ +A
Sbjct: 291 TMSDVDELNEA 301
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
++++V L++ + L F++ GKV++A ++ +R RSKGFG+VT + ++ QKA
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 82 GMN 84
+N
Sbjct: 338 SLN 340
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
T+ ++V L + T+ +L EAF+Q G+V+ + + RS G+GYV +A +DA +A
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
T+ ++V L + T+ +L EAF+Q G+V+ + + RS G+GYV +A +DA +A
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
++++V L++ + L F++ GKV++A ++ +R RSKGFG+VT + ++ QKA
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 82 GMN 84
+N
Sbjct: 317 SLN 319
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
++++V L++ + L F++ GKV++A ++ +R RSKGFG+VT + ++ QKA
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 82 GMN 84
+N
Sbjct: 317 SLN 319
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
++++V L++ + L F++ GKV++A ++ +R RSKGFG+VT + ++ QKA
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 82 GMN 84
+N
Sbjct: 317 SLN 319
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ T KIFV GL ED+L F YG +++ I+ + RS+GFG+VTF E+ +
Sbjct: 154 SKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
K+FV G+++ TT + A F ++G+V+ + I+ +R +GFG+VTFA A+K
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+F+ G+++ T E+ L E FS +G+VL+ ++ +A R +GFG+V F+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFS 55
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+++V L ++ T +L++ F + G V+ IV ++ RS+GFG+VT E+A++A
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
>AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:4014455-4017675 FORWARD LENGTH=638
Length = 638
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 15 PFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
P + IFV + F T+D L+ F+++G+VLKA IV + A + G Y+ F ++E
Sbjct: 473 PLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKE 532
Query: 75 DAQKA 79
A+ A
Sbjct: 533 AAENA 537
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
++FV GL +STTE++L E FS++G + + +VL++ +G +V + E A+ A
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 83 MNR 85
+++
Sbjct: 288 LDK 290
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+K+FV L + LA F Q G V ++++ NR +S+GFG+VT + E+A+KA
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
+ KIFV GLA S TE + + F+Q+G + ++ + R +GFG++++ EE K
Sbjct: 45 SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 102