Miyakogusa Predicted Gene

Lj1g3v0116470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0116470.1 Non Chatacterized Hit- tr|B9FA58|B9FA58_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,41.86,0.00000000004,CDC73,RNA polymerase II accessory factor,
Cdc73; seg,NULL; GB DEF: ARABIDOPSIS THALIANA GENOMIC
DNA,,CUFF.25246.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22590.1 | Symbols: PHP, CDC73 | PLANT HOMOLOGOUS TO PARAFIBR...   551   e-157

>AT3G22590.1 | Symbols: PHP, CDC73 | PLANT HOMOLOGOUS TO
           PARAFIBROMIN | chr3:8003999-8005452 FORWARD LENGTH=415
          Length = 415

 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/416 (65%), Positives = 313/416 (75%), Gaps = 25/416 (6%)

Query: 1   MDPLSALREFTMRGELDKIVKLNGEFRFGEEYSFPCSVETAYRSTKGNRYTLETLVHYVK 60
           MDPLS L+EFT+RG++DKI ++   +RFG EYSFPC+ ETAYRS  G+ YTLE LVHYVK
Sbjct: 1   MDPLSVLKEFTIRGDIDKIERVGANYRFGSEYSFPCATETAYRSKSGSLYTLEALVHYVK 60

Query: 61  NHHLKHTEYFQNTFALGIPSVTLPDRKPILHYLQGTLASTDSI----------------- 103
           N  LKH EY Q+T    +P+VTLPDRKP+L YL G +AS+DSI                 
Sbjct: 61  NQQLKHGEYMQSTVKNSVPAVTLPDRKPLLDYLTGRVASSDSIDFLLLQQQNAQSQKQNE 120

Query: 104 EYRPEDXXXXXXXXXXXXXXXXXXXXNKPDDTEIDFMALIRAAEKPLKDRESLLECKNRD 163
           EYRP+                      K  + ++D++ LIR+ E+PLK R+++L+CKNRD
Sbjct: 121 EYRPDQDNSAFVSRENAIADMEVEDFGKSGE-DVDYIMLIRSNERPLKSRDAILQCKNRD 179

Query: 164 FYSVLVAATKREEERQRIESHQRKDGLVAKSRLMXXXXX-----XXXXXXXXXXXPNPKP 218
           FYSVLV +TKREEERQRIESHQRKDGLVAKSRLM                      NPK 
Sbjct: 180 FYSVLVNSTKREEERQRIESHQRKDGLVAKSRLMGAEERGIVGFSSGGGDDNGYDANPKS 239

Query: 219 KMHLKGSKIGEGVPIILVPSAFQTLITIYNVKEFLEDGIYIPTDVKVKQMKGTRPDCVTV 278
           K+H K  KIGEGVPIILVPSAFQTLITIYNVKEFLEDG+YIP DVK K+MKG +PDC+TV
Sbjct: 240 KLHFKAGKIGEGVPIILVPSAFQTLITIYNVKEFLEDGVYIPNDVKAKEMKGLKPDCITV 299

Query: 279 QKKLSRDR--VVAAYEVRDKPSTLKPEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKII 336
           QKK SRDR  VV AYEVRDKPS LKP+DWDRVVAVFVLGK+WQFK+WPFKDHVEIFNKII
Sbjct: 300 QKKFSRDRERVVTAYEVRDKPSALKPDDWDRVVAVFVLGKDWQFKDWPFKDHVEIFNKII 359

Query: 337 GFFIRFEDDSMESVKTVKQWNVKIISISKNKRHQDRAAALDVWDRLEEFVRSRSHS 392
           GFF+RFEDDS+ES KTVKQWNVKIISISKNKRHQDRAAAL+VW++LEEFVRSRSHS
Sbjct: 360 GFFLRFEDDSIESAKTVKQWNVKIISISKNKRHQDRAAALEVWEKLEEFVRSRSHS 415