Miyakogusa Predicted Gene

Lj0g3v0360289.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360289.2 tr|Q2JMB8|Q2JMB8_SYNJB Hydrolase, alpha/beta fold
family OS=Synechococcus sp. (strain JA-2-3B'a(2-13,44,1e-18,no
description,NULL; seg,NULL; HYDROLASE,NULL; ALPHA/BETA HYDROLASE
FOLD-CONTAINING PROTEIN,NULL; al,CUFF.24805.2
         (394 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25290.1 | Symbols:  | DNA photolyases;DNA photolyases | chr4...   423   e-118
AT5G19850.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...    94   1e-19
AT4G36530.2 | Symbols:  | alpha/beta-Hydrolases superfamily prot...    89   4e-18
AT4G36530.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...    89   5e-18
AT5G38520.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...    83   3e-16
AT5G38520.2 | Symbols:  | alpha/beta-Hydrolases superfamily prot...    79   4e-15
AT5G13800.1 | Symbols: PPH, CRN1 | pheophytinase | chr5:4452063-...    67   2e-11
AT5G13800.2 | Symbols: PPH, CRN1 | pheophytinase | chr5:4452063-...    67   2e-11
AT4G33180.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...    54   3e-07

>AT4G25290.1 | Symbols:  | DNA photolyases;DNA photolyases |
           chr4:12941486-12944994 REVERSE LENGTH=692
          Length = 692

 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/389 (51%), Positives = 269/389 (69%), Gaps = 3/389 (0%)

Query: 2   ELDWGALPVYDDIKELMNKNSWKSGENWKLIKETSAETLLRRDILKXXXXXXXXXXFRQI 61
           EL WG++P  DD+K+ + ++ W+   +W+ + + SAE +L   +               +
Sbjct: 203 ELQWGSVPTLDDLKDYLKESLWEIENSWREMAQASAERVLMERLGNLKESSMEPIVDGSL 262

Query: 62  QSREPNESVFVXXXXXXXXXXXXXXXXXXXXXXXXXEGTARNDWQEVHEKVRSYESRNGA 121
             +  N SVFV                         EGT+R+DWQEVH ++R  E+R GA
Sbjct: 263 GKKVDN-SVFVTSKRDTVGGGNEVVLNALAGYLRYLEGTSRDDWQEVHARLRDAETRPGA 321

Query: 122 SFIGLFGPALSLGIISRRRVYYEAIKYEKERNAGFLSPFGYSAVTIAAAIDAVCSKEWYW 181
           SF  LFGP L LGI+SRR V+YEAI+YEKERNAGF+SPFGYSA T++AA DAVCS EWY+
Sbjct: 322 SFFKLFGPVLCLGIVSRRSVHYEAIEYEKERNAGFISPFGYSAATVSAATDAVCSMEWYY 381

Query: 182 LMALRNHLKNDGIHSTRIWRWNGFLVQYTLAGEDGPAVLLVHGFGAFGEHYRDNIHALAG 241
           L+AL     ++  H+ RIWRW G+L+QYT+ G +GPAVLLVHGFGAF EHYRDN+  +  
Sbjct: 382 LLALSRERIDEKRHAIRIWRWKGYLIQYTVVGNEGPAVLLVHGFGAFLEHYRDNVDNIVN 441

Query: 242 AWNRVWTITLLGFGESEKPNIVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYFVAIVA 301
           + NRVWTIT+LGFG+SEKPNI+YTELLWAELLRDF+ +VVGEP H VGNSIGGYFVA++A
Sbjct: 442 SKNRVWTITVLGFGKSEKPNIIYTELLWAELLRDFMAEVVGEPAHCVGNSIGGYFVALMA 501

Query: 302 RIWSVLIKSAVLINSAGNIIPTYTSIPLPRVSDRQTSGASWLGSRILLFYLRLRIQEIVK 361
            +W  L+KS VL+NSAGN++P Y+ +P+ R  +R+    +  GSR+LLF+L+L +++++K
Sbjct: 502 FLWPALVKSVVLVNSAGNVVPGYSPLPISR--ERRVPFGAQFGSRLLLFFLQLNVKKLLK 559

Query: 362 KCYPTKVERADHWLINEMLRAVSSTSIVF 390
            CYP K ERAD +L+ EMLRA     +V 
Sbjct: 560 DCYPVKPERADDFLVTEMLRASRDPGVVM 588


>AT5G19850.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr5:6709976-6711662 REVERSE LENGTH=359
          Length = 359

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 8/126 (6%)

Query: 197 TRIWRWNGFLVQYTLAGEDGPAVLLVHGFGAFGEHYRDNIHALAGAWNRVWTITLLGFGE 256
           T  W+W G+ ++Y  AG  GPA++LVHGFGA  +H+R N   L G  +RV++I L+G+G 
Sbjct: 75  TLTWKWKGYSIRYQCAGTSGPALVLVHGFGANSDHWRKNTPIL-GKTHRVYSIDLIGYGY 133

Query: 257 SEKPN-------IVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYFVAIVARIWSVLIK 309
           S+KPN         YT   W E L DF +DVV +    + NSIGG      A     + +
Sbjct: 134 SDKPNPREFGGEPFYTFETWGEQLNDFCLDVVKDEAFFICNSIGGLVGLQAAVSKPEICR 193

Query: 310 SAVLIN 315
             +LIN
Sbjct: 194 GLMLIN 199


>AT4G36530.2 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr4:17240120-17241770 REVERSE LENGTH=378
          Length = 378

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 200 WRWNGFLVQYTLAGEDGPAVLLVHGFGAFGEHYRDNIHALAGAWNRVWTITLLGFGESEK 259
           W W G  + Y + GE  P VL +HGFGA   H+R NI  LA  + +V+ + LLGFG S+K
Sbjct: 84  WEWRGHKIHYVVQGEGSPLVL-IHGFGASVFHWRYNIPELAKKY-KVYALDLLGFGWSDK 141

Query: 260 PNIVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYFVAIVARIWSVLIKSAVLINSAGN 319
             I Y  ++W + + DF+ +VV EP  +VGNS+GG+    VA      +    L+NSAG 
Sbjct: 142 ALIEYDAMVWTDQVIDFMKEVVKEPAVVVGNSLGGFTALSVAVGLPEQVTGVALLNSAGQ 201


>AT4G36530.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr4:17240120-17241518 REVERSE LENGTH=321
          Length = 321

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 200 WRWNGFLVQYTLAGEDGPAVLLVHGFGAFGEHYRDNIHALAGAWNRVWTITLLGFGESEK 259
           W W G  + Y + GE  P VL +HGFGA   H+R NI  LA  + +V+ + LLGFG S+K
Sbjct: 27  WEWRGHKIHYVVQGEGSPLVL-IHGFGASVFHWRYNIPELAKKY-KVYALDLLGFGWSDK 84

Query: 260 PNIVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYFVAIVARIWSVLIKSAVLINSAGN 319
             I Y  ++W + + DF+ +VV EP  +VGNS+GG+    VA      +    L+NSAG 
Sbjct: 85  ALIEYDAMVWTDQVIDFMKEVVKEPAVVVGNSLGGFTALSVAVGLPEQVTGVALLNSAGQ 144


>AT5G38520.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr5:15421605-15423234 FORWARD LENGTH=362
          Length = 362

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 14/135 (10%)

Query: 197 TRIWRWNG-FLVQYTLAGEDGP--------AVLLVHGFGAFGEHYRDNIHALAGAWNRVW 247
           ++ W+W G + V Y +  +D P         VLLVHGFGA   H+R NI+AL+   + V+
Sbjct: 64  SKKWKWKGEYSVNYFV--KDSPEEVTPASQTVLLVHGFGASIPHWRRNINALSKN-HTVY 120

Query: 248 TITLLGFGESEKP-NIVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYFVAIVA-RIWS 305
            I LLGFG S+KP    YT   WAEL+ +F+ +VV +P  L+GNS+G     I A     
Sbjct: 121 AIDLLGFGASDKPPGFSYTMESWAELILNFLEEVVQKPTILIGNSVGSLACVIAASESRG 180

Query: 306 VLIKSAVLINSAGNI 320
            L+K  VL+N AG +
Sbjct: 181 DLVKGLVLLNCAGGM 195


>AT5G38520.2 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr5:15421605-15423234 FORWARD LENGTH=374
          Length = 374

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 26/147 (17%)

Query: 197 TRIWRWNG-FLVQYTLAGEDGP--------AVLLVHGFGAFGEHYRDNIHALAGAWNRVW 247
           ++ W+W G + V Y +  +D P         VLLVHGFGA   H+R NI+AL+   + V+
Sbjct: 64  SKKWKWKGEYSVNYFV--KDSPEEVTPASQTVLLVHGFGASIPHWRRNINALSKN-HTVY 120

Query: 248 TITLLGFGESEKP-NIVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYFVAIVARIWSV 306
            I LLGFG S+KP    YT   WAEL+ +F+ +VV +P  L+GNS+G     I A     
Sbjct: 121 AIDLLGFGASDKPPGFSYTMESWAELILNFLEEVVQKPTILIGNSVGSLACVIAASGTKF 180

Query: 307 LI-------------KSAVLINSAGNI 320
           LI             K  VL+N AG +
Sbjct: 181 LIYLEKKTESRGDLVKGLVLLNCAGGM 207


>AT5G13800.1 | Symbols: PPH, CRN1 | pheophytinase |
           chr5:4452063-4454141 REVERSE LENGTH=484
          Length = 484

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 51/238 (21%)

Query: 195 HSTRIWRWNGFLVQYTLAGED---GPAVLLVHGFGAFGEHYRDNIHALAGAWNRVWTITL 251
           HS   W+     V Y  AG D    PAVL + GFG    HY   +  L   + RVW I  
Sbjct: 93  HSHCEWK-PKLRVHYEKAGCDNLDAPAVLFLPGFGVGSFHYEKQLTDLGRDY-RVWAIDF 150

Query: 252 L----------------------------GFGESEKP---NIVYTELLWAELLRDFIVDV 280
           L                            GFG+  +P    +V++  LW + ++ F+ +V
Sbjct: 151 LGQGLSLPTEDPTTMTEETSSSEDKEPFWGFGDKTEPWADQLVFSLDLWRDQVQYFVEEV 210

Query: 281 VGEPVHLVGNSIGGYFVAIVARIWSVLIKSAVLINSAGNIIPTYTSIPLPRVSDRQTSGA 340
           +GEPV++ GNS+GGY     A     L+K   L+N+     P +   P P  S +     
Sbjct: 211 IGEPVYIAGNSLGGYVALYFAATHPHLVKGVTLLNAT----PFWGFFPNPVRSPKLARLF 266

Query: 341 SWLGSRILLFYLRLRIQEIVKKCYPTKVERADHWLINEMLRAVSSTSIV----FFSRI 394
            W G+    F L  R+++I +  +  K+  +D   I E+L+ V +   +     FSRI
Sbjct: 267 PWPGA----FPLPERVKKITELVW-QKI--SDPESIAEILKQVYTDHSINVDKVFSRI 317


>AT5G13800.2 | Symbols: PPH, CRN1 | pheophytinase |
           chr5:4452063-4454141 REVERSE LENGTH=484
          Length = 484

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 51/238 (21%)

Query: 195 HSTRIWRWNGFLVQYTLAGED---GPAVLLVHGFGAFGEHYRDNIHALAGAWNRVWTITL 251
           HS   W+     V Y  AG D    PAVL + GFG    HY   +  L   + RVW I  
Sbjct: 93  HSHCEWK-PKLRVHYEKAGCDNLDAPAVLFLPGFGVGSFHYEKQLTDLGRDY-RVWAIDF 150

Query: 252 L----------------------------GFGESEKP---NIVYTELLWAELLRDFIVDV 280
           L                            GFG+  +P    +V++  LW + ++ F+ +V
Sbjct: 151 LGQGLSLPTEDPTTMTEETSSSEDKEPFWGFGDKTEPWADQLVFSLDLWRDQVQYFVEEV 210

Query: 281 VGEPVHLVGNSIGGYFVAIVARIWSVLIKSAVLINSAGNIIPTYTSIPLPRVSDRQTSGA 340
           +GEPV++ GNS+GGY     A     L+K   L+N+     P +   P P  S +     
Sbjct: 211 IGEPVYIAGNSLGGYVALYFAATHPHLVKGVTLLNAT----PFWGFFPNPVRSPKLARLF 266

Query: 341 SWLGSRILLFYLRLRIQEIVKKCYPTKVERADHWLINEMLRAVSSTSIV----FFSRI 394
            W G+    F L  R+++I +  +  K+  +D   I E+L+ V +   +     FSRI
Sbjct: 267 PWPGA----FPLPERVKKITELVW-QKI--SDPESIAEILKQVYTDHSINVDKVFSRI 317


>AT4G33180.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr4:16000282-16002055 FORWARD LENGTH=307
          Length = 307

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 1/110 (0%)

Query: 212 AGEDGPAVLLVHGFGAFGE-HYRDNIHALAGAWNRVWTITLLGFGESEKPNIVYTELLWA 270
           + +D P +LL+HGFG      +R  + A + +  RV++  L+ FG+S   +   TE+  A
Sbjct: 51  SDDDRPVMLLLHGFGPSSMWQWRRQMQAFSPSAFRVYSPDLVFFGDSTSSSTNRTEVFQA 110

Query: 271 ELLRDFIVDVVGEPVHLVGNSIGGYFVAIVARIWSVLIKSAVLINSAGNI 320
           E +   +  +     ++ G S GG+    +A++W   ++  V+ +S  N+
Sbjct: 111 ECMAKLMAKIGIGKYNVAGTSYGGFVAYHMAKMWPEKVEKVVIASSGINM 160