Miyakogusa Predicted Gene

Lj0g3v0360189.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360189.1 Non Chatacterized Hit- tr|F1Q514|F1Q514_DANRE
Uncharacterized protein OS=Danio rerio GN=zgc:123272
P,28.99,1e-18,seg,NULL; coiled-coil,NULL; Morph_protein1,Exonuclease
V; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,CUFF.24916.1
         (375 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60370.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   300   9e-82

>AT5G60370.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; CONTAINS InterPro DOMAIN/s:
           Defects-in-morphology protein 1-like, mitochondrial
           (InterPro:IPR019190); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT3G57110.1); Has 1807
           Blast hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:24282858-24284760 FORWARD LENGTH=413
          Length = 413

 Score =  300 bits (769), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 167/368 (45%), Positives = 220/368 (59%), Gaps = 34/368 (9%)

Query: 10  PHIPIEIITDDEMALIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI 69
           P IPIEI++++EMA+++                                          I
Sbjct: 40  PEIPIEIVSEEEMAILDAALAASRSILPSVIRSVSPSRITAGGSPKT------------I 87

Query: 70  KSITVLSKRSFSHATGSGTSTHHPDIEDSSPKLKTLLPDSFLHRFRKNRGLSVTDITSTE 129
           +SIT+ SKR  S  +         DIE+S           +LHRFR+N+ L VTD+T TE
Sbjct: 88  RSITLFSKRKLSACS---------DIEES-----------YLHRFRRNQALGVTDLTGTE 127

Query: 130 WCSKQMEFALTLGGRKTNQVMRAGIARHAKLEEEVIKRVEVNIKSKEDQWALKFLNFING 189
           WC KQME  L  G RK N+ M+ G ARH +LEEEV+K+V V ++S ED+WALK LN I G
Sbjct: 128 WCEKQMENVLCFGRRKVNKAMKVGQARHLQLEEEVVKKVRVKVESNEDKWALKLLNSIAG 187

Query: 190 VNQLFFEGLTRELPIMGFAEDTWIVGVIDEIRMPSTE--NDHNPILIDTKTRARDTLPSE 247
           VNQ  FEG TREL ++GF    WIVG+IDE+R    E  +D  PILIDTKTR RDTLP+E
Sbjct: 188 VNQFLFEGRTRELLLLGFVGGQWIVGIIDELRKAYAEESSDSGPILIDTKTRLRDTLPAE 247

Query: 248 PQRRNGRLQLMCYKYLWDSLLADDFPSEKFFTKFGLYPEQTLCEDLKVKSSDPKYSALTL 307
           PQRRNGRLQLM YK LWD+++ + FP+  FF  F L     L +D++   ++    A TL
Sbjct: 248 PQRRNGRLQLMLYKLLWDTIVKEGFPTGPFFDYFSLNRNYVLSQDVRDHIANAGIKAQTL 307

Query: 308 DDVVRYYKNTCSMLLPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEVWLGK 367
           +++VRYY+NT  ML  A++QLLL+YE+QKD S+I E +F +D EW+ S+    IE W  +
Sbjct: 308 EEIVRYYENTFQMLPIANNQLLLKYEFQKDQSIIAEIRFNHDHEWVMSKYREVIEFWRNE 367

Query: 368 RETTYVPE 375
           RE  Y PE
Sbjct: 368 REAGYTPE 375