Miyakogusa Predicted Gene

Lj0g3v0352249.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352249.1 tr|G7I8G1|G7I8G1_MEDTR Replication factor C large
subunit OS=Medicago truncatula GN=MTR_1g030410 PE=,65.4,0,seg,NULL;
P-loop containing nucleoside triphosphate hydrolases,NULL; Rad17,NULL;
no description,NULL,CUFF.24230.1
         (911 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77620.1 | Symbols:  | P-loop containing nucleoside triphosph...   355   1e-97

>AT1G77620.1 | Symbols:  | P-loop containing nucleoside triphosphate
            hydrolases superfamily protein | chr1:29167934-29172867
            REVERSE LENGTH=1151
          Length = 1151

 Score =  355 bits (910), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 291/902 (32%), Positives = 438/902 (48%), Gaps = 84/902 (9%)

Query: 16   LWINKYKPTKATEVCGNSESLNFLRDWLHLWRGGRYHSRKDSSTWDQSYIQXXXXXXXXX 75
            LW++KY+P  A+EVCGN+ES+  + +WL  W    +   KD  + D+   Q         
Sbjct: 312  LWVDKYQPRSASEVCGNTESVKVMNEWLRQWYERGFQPNKDFLSSDEDKSQDADYNCSES 371

Query: 76   XXXXALKDINEEDSLENVLLITGPVGSGKSAAVYACAEEQGFEVLELNASDYRNGAAVKQ 135
                       EDS +NVLLI GP GSGKSAA++ACA+EQGF++LE N S+ R+G  V+Q
Sbjct: 372  DSDSEKS--GAEDSQKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQ 429

Query: 136  YFGEALETHGFKRLLEQAVSSQNKTVKFPPAPTSPNGKAAEEIYDGVIDLTTSSNDGVHS 195
             FGEAL+++   R L+            P   +  +G   E++ + V+ +    NDG + 
Sbjct: 430  KFGEALKSYSLSRSLD------------PLFNSCTDGNGVEDVVE-VMPVLHIQNDGAN- 475

Query: 196  PGGKSQRLHEKNNVFTCHSVQTLILVEDVDILFPEDHGCIAAIKHIAETAKGPIILTSNS 255
                               ++ LIL EDVDI F ED G ++AI+ IA  AKGP++LT+N 
Sbjct: 476  -------------------LKPLILFEDVDICFAEDRGLVSAIQQIAVKAKGPVVLTAND 516

Query: 256  NNVALPGSFIRLHVSFSLPLPDELLCHLYMVCVTEEVNISPHLLKKFIQSCDGDIRKTIM 315
             N  LP +  R+ + FSLP  +EL  HL +VC  EEV ++   L++    C GDIRK IM
Sbjct: 517  KNHGLPDNLERIEIYFSLPSKEELFNHLSLVCAAEEVKVNHGSLEEMTTFCGGDIRKAIM 576

Query: 316  HLQFWFQNXXXXXXXXXXXXXSSLPFDLEAGHELLPKILPWSFPSELPKLIEKEVSKSVT 375
             LQFWFQ+               L FD EAGH LLPKI+   FPS+L +L+E E++K ++
Sbjct: 577  QLQFWFQSKPKRARKVKNTGNQDL-FDHEAGHLLLPKIIARDFPSQLSQLVENEIAKVLS 635

Query: 376  LMEENPCLQGLVEEELQINKKHNDL-----GVQCIVTDEANVEMKRKRSIADCNEFESQC 430
            + EE      +  EE++  K  N L     G   I   +A +  ++  +  D +E E   
Sbjct: 636  MEEERNNTVEVFVEEVENEKMLNRLWRRGTGKNSIQAKKAAM-FRQNTTFEDYDELEDVL 694

Query: 431  SAMSELSNCYGSPLTPSRQMGPKKL-AVMSSESEDK-YPNYGHSLNIHHEDYKRQSLEGN 488
                ELSN    PL+ S+    +KL  VMSS+SED+   +   S++ H +D +    E  
Sbjct: 695  RIPCELSNTSYQPLSFSQPNRRRKLNVVMSSDSEDEPLTDIRVSISQHQKDDRLIFQEDG 754

Query: 489  SESSCKFELNQSYTSMSFCKLVCSGLENSEEQSNYLETSYGAWLDETHKSLNISSFQESM 548
            + SS   ++ +    ++      S  E  E      ETS  ++++E  +S+ IS   ES 
Sbjct: 755  TLSSYWPDMQKETNPLA----DPSRAEILEAACYQYETSKFSYINEVSQSVEISCVPESS 810

Query: 549  IIPETATENRTQTLSAAVSSGHLAGPIEVS--PDNALTPFTFSVCQRIARLPQNLDSLVN 606
             +PET  +   +    AVS GH  G +EVS   D   TP +  +   I R  Q  D L N
Sbjct: 811  YVPETLMDGEAELSPRAVSCGHFDGRVEVSMNEDVVQTPPSKEI--YIDRF-QIFDCLKN 867

Query: 607  TE--IPESSPKVSVQD-FRDENRETTTVYNMMGECSHEEFNLKLNFVESSPSMEI--DMI 661
            T   I ESS    ++D F++       +  +  ECS  +F       E  P ++     +
Sbjct: 868  TSEIIAESSDATVMEDCFKEYVGAAQKMQQVSDECSRMDFGKTYKTAE-KPKLDTSRSAV 926

Query: 662  QNLWRRLLDCKTDLRQNATSEQEGAIQVVKLASELTNLISEVDVLFRNHQQEQC---GIM 718
            Q  W ++     D +    SE   A QV+ L  ++TNLISE D+        +C   G +
Sbjct: 927  QESWEKICSNLADFKPYLDSEPVEAPQVLDLTHQITNLISEADLT-----HSRCLNLGAL 981

Query: 719  EPPIFLSDEATYSWYDEQM--MMSTVAMHGFCFYAKHISDMGSKLGCENRVDVTSEMLAS 776
            EP +  S +   S   + +  M STV+   FCF    I+  GS       V  +S  +  
Sbjct: 982  EPMMNTSGDLDTSGLSQMLEEMTSTVSQQEFCFLTNQITTTGS-------VPTSSATMVP 1034

Query: 777  TTNIMALGKLSRQDHTKSLSNNTTKELDDMKSMQYNENRKSLFNVIQSIVPARLSLAMKG 836
               +      +RQD+T S  +    + D ++ +        L  V++S+VP R   ++KG
Sbjct: 1035 ERGLTV--DEARQDYTSSNGSCLDMKPDILEDLLKCRRMTRLSGVLESVVPLR---SLKG 1089

Query: 837  IAFNEYLSSLRQISVSEDIRMSQGAKK-MRKGRPRGAHYLSRGKMFSPEDISLVCEGDLY 895
             AF+EY S + QIS ++   +S   +K  R+      HYLS     S EDI+L+ +   Y
Sbjct: 1090 RAFHEYASFIGQISRADPSNLSGALEKGRRRRPREARHYLSM--ELSSEDIALLGQHSTY 1147

Query: 896  RK 897
             +
Sbjct: 1148 NR 1149