Miyakogusa Predicted Gene

Lj0g3v0332639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332639.1 Non Chatacterized Hit- tr|D6WW85|D6WW85_TRICA
Putative uncharacterized protein OS=Tribolium
castaneu,26.02,4e-17,TPR-like,NULL; HAT (Half-A-TPR)
repeats,RNA-processing protein, HAT helix; no
description,Tetratrico,CUFF.22682.1
         (724 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03430.1 | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-...   705   0.0  

>AT4G03430.1 | Symbols: STA1, EMB2770 | pre-mRNA splicing
            factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029
          Length = 1029

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/682 (54%), Positives = 474/682 (69%), Gaps = 77/682 (11%)

Query: 83   KTNPQHALSWVAAAKQAKLDGKLGEARELIKKGCEKCPRNDHVWLLA------------- 129
            ++NP++   W+AAA+  ++DGK+  AR  I++GCE+CP+N+ VWL A             
Sbjct: 381  QSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEECPKNEDVWLEACRLANPEDAKGVI 440

Query: 130  -----------------AKLAPDKKEKRRLLSKGLQYVRDSFRLWKSAVEVADKYNARCL 172
                             AKL  D + K R+L KGL+++ DS RLWK+ VE+A++ +AR L
Sbjct: 441  AKGVKLIPNSVKLWLEAAKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARIL 500

Query: 173  LHSAVDDCPLEVELWLALAKLETYAGAKAVLIRARERLPHERALWILDAELEEANG---- 228
            LH AV+ CPL +ELW+ALA+LETYA +K VL +ARE+LP E A+WI  A+LEEANG    
Sbjct: 501  LHRAVECCPLHLELWVALARLETYAESKKVLNKAREKLPKEPAIWITAAKLEEANGKLDE 560

Query: 229  ---DSSKIGVIIQFALRC---EGLVSDTEYWMLRGIEYREAWVKREREMFDXXXXXXXXX 282
               +++ +G II   ++    EG+V D E WM             E E  +         
Sbjct: 561  ANDNTAMVGKIIDRGIKTLQREGVVIDRENWM------------SEAEACERV------- 601

Query: 283  XXXXGGYVETCKEIIRHTIGIGVEEADRKRTWVSEAEECKKRGSVNTARAIYAHALTFLM 342
                 G V TC+ II++TIGIGVEE DRKRTWV++A+ECKKRGS+ TARAIYAHAL+  +
Sbjct: 602  -----GSVATCQAIIKNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHALSVFL 656

Query: 343  SKKSVWVKAAYLEKSHGTTESLEVLLRKAVLYRPRAEVPWLMGGKEKWLAGDVPSXXXXX 402
            +KKS+W+KAA LEKSHG+ ESL+ LLRKAV Y P+AEV WLMG KEKWLAGDVP+     
Sbjct: 657  TKKSIWLKAAQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAIL 716

Query: 403  XXXXXXXPDSEDIWLAAAKLEFENNEHEAARLLLSQARTEVNTERVWMKSAIVERELGNI 462
                   P+SE+IWLAA KLEFEN E E AR+LL++AR    TERVWMKSAIVERELGN+
Sbjct: 717  QEAYAAIPNSEEIWLAAFKLEFENKEPERARMLLAKARERGGTERVWMKSAIVERELGNV 776

Query: 463  ESENTLLKEGLVQFPSFFKLWLMLGQLEERLAAAQPEKYFDHLKEARNAYDSGLKECVNC 522
            E E  LL EGL QFP+FFKLWLMLGQLEER         F HL++AR AYD+GLK C +C
Sbjct: 777  EEERRLLNEGLKQFPTFFKLWLMLGQLEER---------FKHLEQARKAYDTGLKHCPHC 827

Query: 523  VPLWLSRANLEEE----TKAREVLKMAQEKNPKNPELLLAAVRLESKHGHQEEADILMAK 578
            +PLWLS A+LEE+     KAR +L  A++KNP   EL LAA+R E +H ++ EA+ LM+K
Sbjct: 828  IPLWLSLADLEEKVNGLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSK 887

Query: 579  ALQECPNSGILWAASIEMVPHPLRKTKSMDALKKCDDDPHVIAAVAKLFCHDGKVDIART 638
            ALQ+CP SGILWAA IEM P P RKTKS+DA+KKCD DPHV  AVAKLF  D KV+ AR 
Sbjct: 888  ALQDCPKSGILWAADIEMAPRPRRKTKSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARA 947

Query: 639  WLNRLVTLAPDIGDFWALCYQFEMHHGTEENREDVLKRCVAAKPKYGEIWQANSKAGENA 698
            W  R VT+ PDIGDFWAL Y+FE+ HG++E+R++V+ +CVA +PK+GE WQA SKA ENA
Sbjct: 948  WFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACEPKHGEKWQAISKAVENA 1007

Query: 699  HQPTEIILKKVEDALGKKENAA 720
            HQP E+ILK+V +AL K+EN+A
Sbjct: 1008 HQPIEVILKRVVNALSKEENSA 1029



 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 144/347 (41%), Gaps = 38/347 (10%)

Query: 366 VLLRKAVLYRPRAEVPWLMGGKEKWLAGDVPSXXXXXXXXXXXXPDSEDIWLAAAKLEFE 425
           +L +      P+    W+   + + + G + +            P +ED+WL A +L   
Sbjct: 374 LLYKSLTQSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEECPKNEDVWLEACRLA-- 431

Query: 426 NNEHEAARLLLSQARTEVNTERVWMKSAIVERELGNIESENTLLKEGLVQFPSFFKLWLM 485
            N  +A  ++    +   N+ ++W+++A +E    ++E+++ +L++GL   P   +LW  
Sbjct: 432 -NPEDAKGVIAKGVKLIPNSVKLWLEAAKLEH---DVENKSRVLRKGLEHIPDSVRLWKA 487

Query: 486 LGQLEERLAAAQPEKYFDHLKEARNAYDSGLKECVNCVPLWLSRANLEEETKAREVLKMA 545
           + +L                ++AR      ++ C   + LW++ A LE   ++++VL  A
Sbjct: 488 VVELANE-------------EDARILLHRAVECCPLHLELWVALARLETYAESKKVLNKA 534

Query: 546 QEKNPKNPELLLAAVRLESKHGHQEEADI-------LMAKALQECPNSGIL-----WAAS 593
           +EK PK P + + A +LE  +G  +EA+        ++ + ++     G++     W + 
Sbjct: 535 REKLPKEPAIWITAAKLEEANGKLDEANDNTAMVGKIIDRGIKTLQREGVVIDRENWMSE 594

Query: 594 IEMVPHPLRKTKSMDALKKC-------DDDPHVIAAVAKLFCHDGKVDIARTWLNRLVTL 646
            E              +K         +D      A A      G ++ AR      +++
Sbjct: 595 AEACERVGSVATCQAIIKNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHALSV 654

Query: 647 APDIGDFWALCYQFEMHHGTEENREDVLKRCVAAKPKYGEIWQANSK 693
                  W    Q E  HG+ E+ + +L++ V   P+   +W   +K
Sbjct: 655 FLTKKSIWLKAAQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAK 701



 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 21/208 (10%)

Query: 432 ARLLL-SQARTEVNTERVWMKSAIVERELGNIESENTLLKEGLVQFPSFFKLWLMLGQLE 490
           ARLL  S  ++       W+ +A VE   G I++    ++ G  + P    +WL   +L 
Sbjct: 372 ARLLYKSLTQSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEECPKNEDVWLEACRL- 430

Query: 491 ERLAAAQPEKYFDHLKEARNAYDSGLKECVNCVPLWLSRANLEE--ETKAREVLKMAQEK 548
                A PE       +A+     G+K   N V LWL  A LE   E K+R VL+   E 
Sbjct: 431 -----ANPE-------DAKGVIAKGVKLIPNSVKLWLEAAKLEHDVENKSR-VLRKGLEH 477

Query: 549 NPKNPELLLAAVRLESKHGHQEEADILMAKALQECPNSGILWAASIEMVPHPLRKTKSMD 608
            P +  L  A V L     ++E+A IL+ +A++ CP    LW A   +  +   K     
Sbjct: 478 IPDSVRLWKAVVEL----ANEEDARILLHRAVECCPLHLELWVALARLETYAESKKVLNK 533

Query: 609 ALKKCDDDPHVIAAVAKLFCHDGKVDIA 636
           A +K   +P +    AKL   +GK+D A
Sbjct: 534 AREKLPKEPAIWITAAKLEEANGKLDEA 561