Miyakogusa Predicted Gene
- Lj0g3v0332199.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0332199.1 Non Chatacterized Hit- tr|A3BBU9|A3BBU9_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,44.33,4e-17,FAMILY NOT NAMED,NULL;
Homeobox,Homeodomain,CUFF.22642.1
(262 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15215.2 | Symbols: | BEST Arabidopsis thaliana protein matc... 223 8e-59
AT1G15215.3 | Symbols: | BEST Arabidopsis thaliana protein matc... 208 2e-54
AT1G15215.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 203 1e-52
AT3G18380.1 | Symbols: | sequence-specific DNA binding transcri... 146 1e-35
AT3G18380.3 | Symbols: | sequence-specific DNA binding transcri... 142 2e-34
AT3G18380.2 | Symbols: | sequence-specific DNA binding transcri... 142 3e-34
>AT1G15215.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription
factors;sequence-specific DNA binding
(TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:5238096-5239770 FORWARD
LENGTH=258
Length = 258
Score = 223 bits (569), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 162/246 (65%), Gaps = 22/246 (8%)
Query: 11 FPKLSTDQMLELERIYNDMGENAFDQNLCQEIAATLSAA-----NTSISWEQVQQWFQNK 65
F + + +++++E +Y ++G+ + ++ CQ +A+T S + +SI+W+QVQ WFQ K
Sbjct: 11 FTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK 70
Query: 66 L-HESQDRAASLN----QLVDISDTPSLRS----------STVLQGNRGAV--VSDLAFE 108
L H+SQ ++ +L Q+ D+S+ S S ST +Q +G ++DLAFE
Sbjct: 71 LKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFE 130
Query: 109 ARSTKDLAWHDVSMLLNYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDRSIPLEPAE 168
A+S +D AW+DVS L YRVL TGELE RVR++GF DEWVNVK VR+RSIP+EP+E
Sbjct: 131 AKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSE 190
Query: 169 CHKGKEGDLVLCFPERDDYALYCDARVLSIQRKQHDETDCKCIYTVRFLHDNSEEAIHWE 228
C + GDL+LCF ER+D ALYCD VL+I+R HD C C++ VR+ DN+EE++ E
Sbjct: 191 CGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLE 250
Query: 229 RVCYRP 234
R+C RP
Sbjct: 251 RICRRP 256
>AT1G15215.3 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription
factors;sequence-specific DNA binding
(TAIR:AT3G18380.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr1:5238096-5239741 FORWARD LENGTH=252
Length = 252
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 153/234 (65%), Gaps = 22/234 (9%)
Query: 11 FPKLSTDQMLELERIYNDMGENAFDQNLCQEIAATLSAA-----NTSISWEQVQQWFQNK 65
F + + +++++E +Y ++G+ + ++ CQ +A+T S + +SI+W+QVQ WFQ K
Sbjct: 11 FTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK 70
Query: 66 L-HESQDRAASLN----QLVDISDTPSLRS----------STVLQGNRGAV--VSDLAFE 108
L H+SQ ++ +L Q+ D+S+ S S ST +Q +G ++DLAFE
Sbjct: 71 LKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFE 130
Query: 109 ARSTKDLAWHDVSMLLNYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDRSIPLEPAE 168
A+S +D AW+DVS L YRVL TGELE RVR++GF DEWVNVK VR+RSIP+EP+E
Sbjct: 131 AKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSE 190
Query: 169 CHKGKEGDLVLCFPERDDYALYCDARVLSIQRKQHDETDCKCIYTVRFLHDNSE 222
C + GDL+LCF ER+D ALYCD VL+I+R HD C C++ VR+ DN+E
Sbjct: 191 CGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTE 244
>AT1G15215.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription
factors;sequence-specific DNA binding
(TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:5238238-5239741 FORWARD
LENGTH=231
Length = 231
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 146/223 (65%), Gaps = 22/223 (9%)
Query: 22 LERIYNDMGENAFDQNLCQEIAATLSAA-----NTSISWEQVQQWFQNKL-HESQDRAAS 75
+E +Y ++G+ + ++ CQ +A+T S + +SI+W+QVQ WFQ KL H+SQ ++ +
Sbjct: 1 MENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEKLKHQSQPKSKT 60
Query: 76 LN----QLVDISDTPSLRS----------STVLQGNRGAV--VSDLAFEARSTKDLAWHD 119
L Q+ D+S+ S S ST +Q +G ++DLAFEA+S +D AW+D
Sbjct: 61 LPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAKSARDYAWYD 120
Query: 120 VSMLLNYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDRSIPLEPAECHKGKEGDLVL 179
VS L YRVL TGELE RVR++GF DEWVNVK VR+RSIP+EP+EC + GDL+L
Sbjct: 121 VSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLL 180
Query: 180 CFPERDDYALYCDARVLSIQRKQHDETDCKCIYTVRFLHDNSE 222
CF ER+D ALYCD VL+I+R HD C C++ VR+ DN+E
Sbjct: 181 CFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTE 223
>AT3G18380.1 | Symbols: | sequence-specific DNA binding
transcription factors;sequence-specific DNA binding |
chr3:6311002-6313181 REVERSE LENGTH=348
Length = 348
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 115/215 (53%), Gaps = 33/215 (15%)
Query: 53 ISWEQVQQWFQNKLHESQDRAASLNQLVDISDTP---------------SLRSSTVLQGN 97
+ ++Q+ WFQN+ + + R +++S P S+ +T + GN
Sbjct: 58 VQFKQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGN 117
Query: 98 --------RGAVV----------SDLAFEARSTKDLAWHDVSMLLNYRVLSTGELEARVR 139
G++V S L FEA+S +D AW+DV L +R L G+ E +VR
Sbjct: 118 LPGMTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVR 177
Query: 140 YAGFGKGEDEWVNVKYGVRDRSIPLEPAECHKGKEGDLVLCFPERDDYALYCDARVLSIQ 199
+AGF EDEW+NVK VR RS+P E +EC GDLVLCF E D ALY DA VL Q
Sbjct: 178 FAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQ 237
Query: 200 RKQHDETDCKCIYTVRFLHDNSEEAIHWERVCYRP 234
R++HD C+C + VR+ HD SEE + ++C RP
Sbjct: 238 RRRHDVRGCRCRFLVRYSHDQSEEIVPLRKICRRP 272
>AT3G18380.3 | Symbols: | sequence-specific DNA binding
transcription factors;sequence-specific DNA binding |
chr3:6311002-6313181 REVERSE LENGTH=346
Length = 346
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 113/213 (53%), Gaps = 31/213 (14%)
Query: 53 ISWEQVQQWFQNKLHESQDRAASLNQLVDISDTP---------------SLRSSTVLQGN 97
+ ++Q+ WFQN+ + + R +++S P S+ +T + GN
Sbjct: 58 VQFKQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGN 117
Query: 98 ---------------RGAVVSDLAFEARSTKDLAWHDVSMLLNYRVLSTGELEARVRYAG 142
G+ S L FEA+S +D AW+DV L +R L G+ E +VR+AG
Sbjct: 118 LPGMTPAPSVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAG 177
Query: 143 FGKGEDEWVNVKYGVRDRSIPLEPAECHKGKEGDLVLCFPERDDYALYCDARVLSIQRKQ 202
F EDEW+NVK VR RS+P E +EC GDLVLCF E D ALY DA VL QR++
Sbjct: 178 FEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRR 237
Query: 203 HDETDCKCIYTVRFLHDNSE-EAIHWERVCYRP 234
HD C+C + VR+ HD SE E + ++C RP
Sbjct: 238 HDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRP 270
>AT3G18380.2 | Symbols: | sequence-specific DNA binding
transcription factors;sequence-specific DNA binding |
chr3:6311002-6313181 REVERSE LENGTH=349
Length = 349
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 115/216 (53%), Gaps = 34/216 (15%)
Query: 53 ISWEQVQQWFQNKLHESQDRAASLNQLVDISDTP---------------SLRSSTVLQGN 97
+ ++Q+ WFQN+ + + R +++S P S+ +T + GN
Sbjct: 58 VQFKQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGN 117
Query: 98 --------RGAVV----------SDLAFEARSTKDLAWHDVSMLLNYRVLSTGELEARVR 139
G++V S L FEA+S +D AW+DV L +R L G+ E +VR
Sbjct: 118 LPGMTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVR 177
Query: 140 YAGFGKGEDEWVNVKYGVRDRSIPLEPAECHKGKEGDLVLCFPERDDYALYCDARVLSIQ 199
+AGF EDEW+NVK VR RS+P E +EC GDLVLCF E D ALY DA VL Q
Sbjct: 178 FAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQ 237
Query: 200 RKQHDETDCKCIYTVRFLHDNSE-EAIHWERVCYRP 234
R++HD C+C + VR+ HD SE E + ++C RP
Sbjct: 238 RRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRP 273