Miyakogusa Predicted Gene
- Lj0g3v0293049.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0293049.1 Non Chatacterized Hit- tr|K4BGB7|K4BGB7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.74,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; coiled-coil,NULL,CUFF.19604.1
(152 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13220.2 | Symbols: LINC2 | nuclear matrix constituent protei... 79 1e-15
AT1G67230.1 | Symbols: LINC1 | little nuclei1 | chr1:25151561-25... 77 4e-15
AT1G68790.1 | Symbols: LINC3 | little nuclei3 | chr1:25834932-25... 69 1e-12
AT5G65770.2 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26... 48 3e-06
AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid amin... 48 3e-06
AT5G65770.3 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26... 47 4e-06
AT5G65770.1 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26... 47 4e-06
>AT1G13220.2 | Symbols: LINC2 | nuclear matrix constituent
protein-related | chr1:4515699-4520071 FORWARD
LENGTH=1128
Length = 1128
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 74/94 (78%)
Query: 20 IKAEISQQELQICQETENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEADSLREE 79
I+AE++++E I +E ++L++ +EER E+ RLQ EL+ +IE +R+ ++FL KE ++L++E
Sbjct: 491 IRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVHEEFLSKEVENLKQE 550
Query: 80 RQRFEKEWEALDEKKAEVSKEHNEINEEKERLKR 113
++RFEKEWE LDEK+A +KE I+EEKE+ +R
Sbjct: 551 KERFEKEWEILDEKQAVYNKERIRISEEKEKFER 584
>AT1G67230.1 | Symbols: LINC1 | little nuclei1 |
chr1:25151561-25156032 REVERSE LENGTH=1132
Length = 1132
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 20 IKAEISQQELQICQETENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEADSLREE 79
+ E Q +I +E + L++TEEERSE+ RLQ EL+++IE R Q++ L KEA+ L+ +
Sbjct: 458 VSGENQAQLSEINKEKDELRVTEEERSEYLRLQTELKEQIEKCRSQQELLQKEAEDLKAQ 517
Query: 80 RQRFEKEWEALDEKKAEVSKEHNEINEEKERLKR 113
R+ FEKEWE LDE+KA++ E I ++KE+L+R
Sbjct: 518 RESFEKEWEELDERKAKIGNELKNITDQKEKLER 551
>AT1G68790.1 | Symbols: LINC3 | little nuclei3 |
chr1:25834932-25839157 REVERSE LENGTH=1085
Length = 1085
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 73/93 (78%)
Query: 20 IKAEISQQELQICQETENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEADSLREE 79
I E ++QE +I +E E+L++T+EER E RLQ EL+Q+I+ + +++ L+KE + L+++
Sbjct: 469 IGTETTKQESRIREEHESLRITKEERVEFLRLQSELKQQIDKVKQEEELLLKEREELKQD 528
Query: 80 RQRFEKEWEALDEKKAEVSKEHNEINEEKERLK 112
++RFEKEWEALD+K+A +++E NE+ EE E+L+
Sbjct: 529 KERFEKEWEALDKKRANITREQNEVAEENEKLR 561
>AT5G65770.2 | Symbols: LINC4 | little nuclei4 |
chr5:26311587-26315544 FORWARD LENGTH=1042
Length = 1042
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 35 TENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEADSLREERQRFEKEWEALDEKK 94
T+ L+ + E SE S L+++L++E++ R QK ++ EAD L+ E+ +FE EWE +D K+
Sbjct: 510 TQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKR 569
Query: 95 AEVSKEHNEINEEKERLKREKQDIQDRI 122
E+ KE I ++E +D +D I
Sbjct: 570 EELRKEAEYITRQREAFSMYLKDERDNI 597
>AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid
aminotransferase 5 / branched-chain amino acid
transaminase 5 (BCAT5) | chr5:26311587-26315610 FORWARD
LENGTH=1018
Length = 1018
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 35 TENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEADSLREERQRFEKEWEALDEKK 94
T+ L+ + E SE S L+++L++E++ R QK ++ EAD L+ E+ +FE EWE +D K+
Sbjct: 491 TQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKR 550
Query: 95 AEVSKEHNEINEEKERLKREKQDIQDRI 122
E+ KE I ++E +D +D I
Sbjct: 551 EELRKEAEYITRQREAFSMYLKDERDNI 578
>AT5G65770.3 | Symbols: LINC4 | little nuclei4 |
chr5:26311587-26315610 FORWARD LENGTH=1010
Length = 1010
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 35 TENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEADSLREERQRFEKEWEALDEKK 94
T+ L+ + E SE S L+++L++E++ R QK ++ EAD L+ E+ +FE EWE +D K+
Sbjct: 483 TQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKR 542
Query: 95 AEVSKEHNEINEEKERLKREKQDIQDRI 122
E+ KE I ++E +D +D I
Sbjct: 543 EELRKEAEYITRQREAFSMYLKDERDNI 570
>AT5G65770.1 | Symbols: LINC4 | little nuclei4 |
chr5:26311587-26315610 FORWARD LENGTH=1010
Length = 1010
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 35 TENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEADSLREERQRFEKEWEALDEKK 94
T+ L+ + E SE S L+++L++E++ R QK ++ EAD L+ E+ +FE EWE +D K+
Sbjct: 483 TQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKR 542
Query: 95 AEVSKEHNEINEEKERLKREKQDIQDRI 122
E+ KE I ++E +D +D I
Sbjct: 543 EELRKEAEYITRQREAFSMYLKDERDNI 570