Miyakogusa Predicted Gene

Lj0g3v0290279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290279.1 tr|Q793C9|Q793C9_MOUSE U2 small nuclear
ribonucleoprotein auxiliary factor (U2AF) 1, related
sequenc,42.86,8e-19,U2AUXFACTOR,U2 auxiliary factor small subunit;
zinc finger,Zinc finger, CCCH-type; seg,NULL; U2 SNRN,CUFF.19402.1
         (281 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   219   2e-57
AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...    59   4e-09
AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...    57   1e-08
AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...    56   3e-08
AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...    56   3e-08

>AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:3384164-3388373 REVERSE LENGTH=757
          Length = 757

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 110/132 (83%)

Query: 42  FQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAICGEY 101
           F+VC+NGSFHL+GNVYV Y+ L+SA+LAY S+NGRYFAGKQV+CEF+N++RWKVAICGEY
Sbjct: 324 FKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEY 383

Query: 102 MKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVRKMAALFGYSDDYEILREQ 161
           MKS  KTCS G+ACNFIHCFRNPGGDYEWAD D+PPP+FW+ KM +LFGYSD+  +  E 
Sbjct: 384 MKSRLKTCSRGSACNFIHCFRNPGGDYEWADHDRPPPRFWIHKMTSLFGYSDEKHMEHES 443

Query: 162 GNLSGQSYRNMS 173
                 S  ++S
Sbjct: 444 SGSLNDSISDLS 455


>AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615302-9616042 FORWARD
           LENGTH=246
          Length = 246

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 29  LLASVLILISVHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFI 88
           L   +     +    +C N + H+ GNVYVQ+K  D A  A  ++ GR+++G+ +  +F 
Sbjct: 35  LFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFS 94

Query: 89  NLTRWKVAICGEYMKSGFKTCSHGTACNFIHC 120
            +T ++ A C +Y ++    C+ G  CNF+H 
Sbjct: 95  PVTDFREATCRQYEEN---NCNRGGYCNFMHV 123


>AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615152-9616042 FORWARD
           LENGTH=296
          Length = 296

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    +C N + H+ GNVYVQ+K  D A  A  ++ GR+++G+ +  +F  +T ++ A C
Sbjct: 95  IESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++    C+ G  CNF+H
Sbjct: 155 RQYEEN---NCNRGGYCNFMH 172


>AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  ++ GR+++G+ +  +F  +T ++ A C
Sbjct: 95  VESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172


>AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  ++ GR+++G+ +  +F  +T ++ A C
Sbjct: 95  VESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172