Miyakogusa Predicted Gene

Lj0g3v0284669.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284669.1 Non Chatacterized Hit- tr|I3S180|I3S180_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.47,0,coiled-coil,NULL; PNAS-RELATED,Uncharacterised conserved
protein UCP023322, transmembrane eukaryotic,CUFF.19151.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06660.1 | Symbols:  | Protein of unknown function DUF106, tr...   251   1e-67
AT3G12030.1 | Symbols:  | Protein of unknown function DUF106, tr...   248   2e-66

>AT5G06660.1 | Symbols:  | Protein of unknown function DUF106,
           transmembrane | chr5:2046863-2047453 FORWARD LENGTH=196
          Length = 196

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/189 (68%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTD--S 62
           F+ FKY+D LTVVGISFCTA+VCEAISW+LIYRT+SYK+L+SSIDKASKKLETMKTD  S
Sbjct: 8   FASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDNPS 67

Query: 63  QXXXXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXXXXXEGKVVAK 122
                        DRVE+SLKESSRDLSLFKFKS                   EGKVVAK
Sbjct: 68  SKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAK 127

Query: 123 LPFKPFGLVMKMSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGA--SAGL 180
           LPF P  +V KMSHRGL+G D TDCSMAFLY LCSISIRTNLQKFLGF+PPRGA  + GL
Sbjct: 128 LPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGL 187

Query: 181 FPMPDPKTS 189
           FPMPDPKT+
Sbjct: 188 FPMPDPKTN 196


>AT3G12030.1 | Symbols:  | Protein of unknown function DUF106,
           transmembrane | chr3:3834465-3835055 REVERSE LENGTH=196
          Length = 196

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDS-- 62
           F+ FKY+D LTVVGISFCTA+VCEAISW+LIYRT+SYK+L+ SIDKA+KKLETMKT++  
Sbjct: 8   FASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPS 67

Query: 63  QXXXXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXXXXXEGKVVAK 122
                        DRVETSLKESSRDLSLFKFKS                   EGKVVAK
Sbjct: 68  SKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAK 127

Query: 123 LPFKPFGLVMKMSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGA--SAGL 180
           LPF P  +V KMSHRGL+G DPTDCSMAFLY LCSISIRTNLQKFLGF+PPRGA  + GL
Sbjct: 128 LPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGL 187

Query: 181 FPMPDPKTS 189
           FPMPDPKT+
Sbjct: 188 FPMPDPKTN 196