Miyakogusa Predicted Gene
- Lj0g3v0283139.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0283139.2 Non Chatacterized Hit- tr|I1N259|I1N259_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13136
PE,38.93,0.00000000000008,no description,NULL; domain in FBox and BRCT
domain containing pl,FBD; FBD,FBD,CUFF.18867.2
(155 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53640.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box doma... 55 1e-08
AT4G13985.1 | Symbols: FBD1 | FBD-associated F-box protein | chr... 53 9e-08
AT3G50710.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 53 9e-08
AT1G78750.1 | Symbols: | F-box/RNI-like superfamily protein | c... 51 3e-07
AT2G26030.2 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 49 9e-07
AT2G26030.3 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 49 1e-06
AT2G26030.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 49 1e-06
AT1G66310.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 48 3e-06
AT1G69630.1 | Symbols: | F-box/RNI-like superfamily protein | c... 47 6e-06
AT5G22730.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 47 6e-06
AT5G56820.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 47 7e-06
>AT5G53640.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810), FBD
(InterPro:IPR013596), FBD-like (InterPro:IPR006566),
F-box domain, Skp2-like (InterPro:IPR022364),
Leucine-rich repeat 2 (InterPro:IPR013101); BEST
Arabidopsis thaliana protein match is:
F-box/RNI-like/FBD-like domains-containing protein
(TAIR:AT5G53635.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:21788311-21790690
REVERSE LENGTH=517
Length = 517
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 29 FMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLII-----CKDTLTSPKPQHEWNPIPDTP 83
F + +L V+ G+ L TFL CP L+ LI+ K L + ++ +P
Sbjct: 384 FSYMSRLSVTLGVSDLQFLPTFLESCPNLKSLIMESNSNSKRMLLNGNYHINFSSVPKCL 443
Query: 84 LEHLKFFCMKN----YVGSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSL 139
L L+F +K+ YV ++++ Y L+N+ L+ L + A L +D+IVK L
Sbjct: 444 LSSLEFVDIKSSILVYVA---RMKLVKYFLENSTTLKKLTLRLALRLQYCSAKDEIVKKL 500
Query: 140 SKLPTTSKNCHV 151
K P SK C V
Sbjct: 501 RKFPRISKTCQV 512
>AT4G13985.1 | Symbols: FBD1 | FBD-associated F-box protein |
chr4:8080118-8081669 REVERSE LENGTH=459
Length = 459
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 28 VFMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHEWNPIPD-----T 82
+F N+ L V + Y W+ L FL CP L+ L++ + P + N +P T
Sbjct: 333 LFRNVSFLRVEFADYRWEMLPIFLESCPNLKSLVL---GFSIPPGKEGANILPGPRRFLT 389
Query: 83 PLEHLKFFCMKNYVGSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSLSKL 142
LE++K S+I+L+++ Y L+N+ +L+ L + K IVK L +
Sbjct: 390 SLEYVKIAKPMAAEASEIKLKLVSYFLENSTILKKLTLCLRNF--REKEESVIVKKLLTI 447
Query: 143 PTTSKNCHVLLL 154
P S +C V +L
Sbjct: 448 PRLSPSCQVFVL 459
>AT3G50710.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr3:18845199-18846673
REVERSE LENGTH=427
Length = 427
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 29 FMNLKQLEVSW-GIYYWDRLITFLHHCPQLEQLII--CK----DTLTSPKPQHEWNP--I 79
F L LE+ + +WD L L P+L+ L I CK D L P +H P +
Sbjct: 293 FYQLVHLELCGDALMWWDLLTWMLQSSPKLQVLKIYECKCEEHDYLDDPIEEHWEEPSSV 352
Query: 80 PDTPLEHLKFFCMKNYVGSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSL 139
P L HL F K Y D E +++ Y+LKNA L+T A L + R + + L
Sbjct: 353 PQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATFSAASYLYPKEERSRELNEL 412
Query: 140 SKLPTTSKNCHVLL 153
+ S +C +LL
Sbjct: 413 VYMARASSSCQLLL 426
>AT1G78750.1 | Symbols: | F-box/RNI-like superfamily protein |
chr1:29613122-29614695 REVERSE LENGTH=458
Length = 458
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 28 VFMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHEWNPIPDTPLEHL 87
+F NL L V + Y W+ L FL CP L+ L++ K +P L L
Sbjct: 334 LFRNLSSLRVDFYGYKWEMLPIFLESCPNLKSLVVGSANYRE-KEGINILSVPRGFLSSL 392
Query: 88 KFFCMKNYV-GSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSLSKLPTTS 146
++ ++ + G +E++++ Y+L+N+ +L+ L + S+ K I+K L+ +P S
Sbjct: 393 EYVKIERPLKGEAMEMKLVSYLLENSTILKKLTLCLDDSI--KKEESVILKELNTIPRLS 450
Query: 147 KNCHVLLL 154
C V++L
Sbjct: 451 SACQVVIL 458
>AT2G26030.2 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr2:11091505-11092781
REVERSE LENGTH=369
Length = 369
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 29 FMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHEW-NPIPDTPLEHL 87
F NL +L+ + L+ FL CP LE LI+ D S +P+ + +P L L
Sbjct: 244 FDNLYRLQAAVSRSMLQLLLVFLESCPNLENLIL--DFTVSTEPEQDGLTYVPQCLLSSL 301
Query: 88 KFFCMKNYV-GSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSLSKLPTTS 146
+ ++ + G + +++ Y LKN+++L+ L + S +N+ D I K LS S
Sbjct: 302 ECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSD-IFKELSTFTKRS 360
Query: 147 KNCHVLLL 154
++C V+++
Sbjct: 361 RSCEVIII 368
>AT2G26030.3 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr2:11091505-11093000
REVERSE LENGTH=442
Length = 442
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 29 FMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHE-WNPIPDTPLEHL 87
F NL +L+ + L+ FL CP LE LI+ D S +P+ + +P L L
Sbjct: 317 FDNLYRLQAAVSRSMLQLLLVFLESCPNLENLIL--DFTVSTEPEQDGLTYVPQCLLSSL 374
Query: 88 KFFCMKNYV-GSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSLSKLPTTS 146
+ ++ + G + +++ Y LKN+++L+ L + S +N+ D I K LS S
Sbjct: 375 ECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSD-IFKELSTFTKRS 433
Query: 147 KNCHVLLL 154
++C V+++
Sbjct: 434 RSCEVIII 441
>AT2G26030.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr2:11091505-11093000
REVERSE LENGTH=442
Length = 442
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 29 FMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHE-WNPIPDTPLEHL 87
F NL +L+ + L+ FL CP LE LI+ D S +P+ + +P L L
Sbjct: 317 FDNLYRLQAAVSRSMLQLLLVFLESCPNLENLIL--DFTVSTEPEQDGLTYVPQCLLSSL 374
Query: 88 KFFCMKNYV-GSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSLSKLPTTS 146
+ ++ + G + +++ Y LKN+++L+ L + S +N+ D I K LS S
Sbjct: 375 ECVEIRELIMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIANQDSD-IFKELSTFTKRS 433
Query: 147 KNCHVLLL 154
++C V+++
Sbjct: 434 RSCEVIII 441
>AT1G66310.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr1:24722971-24724475
REVERSE LENGTH=442
Length = 442
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 28 VFMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHEWNPIPDTPLEHL 87
+F NL L V + W+ L FL CP L+ L++ ++TSPK + P L L
Sbjct: 322 LFCNLSYLSVDFYNNSWEILPIFLESCPNLKSLVV--GSITSPKRRTSVLSGPRRLLSSL 379
Query: 88 KFFCMKN-YVGSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSLSKLPTTS 146
++ +++ G E++++ Y+L+N+ +L+ L I S R + L +P S
Sbjct: 380 EYVEIESPLTGEVFEMKLVSYLLENSPILKKLTINLDDS-----SRKKAECELLTIPRRS 434
Query: 147 KNCHVLLL 154
+C V++L
Sbjct: 435 TSCQVVVL 442
>AT1G69630.1 | Symbols: | F-box/RNI-like superfamily protein |
chr1:26191640-26193174 REVERSE LENGTH=451
Length = 451
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Query: 28 VFMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHEWNPIPDTPLEHL 87
+F NL L V + Y W+ L FL CP L+ L++ K K ++ P P L L
Sbjct: 327 LFRNLSVLCVEFYGYMWEMLPIFLESCPNLKTLVV-KSASYQEKGENIILPGPRRFLSSL 385
Query: 88 KFFCMKNYV-GSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIVKSLSKLPTTS 146
++ ++ + G +E++++ Y+L+N+ +L+ L + S+ K I+K L +P S
Sbjct: 386 EYVKIERPLKGEAMEMKLVSYLLENSTILKKLTLCLDDSV--KKEDSVILKELLAIPRLS 443
Query: 147 KNCHVLLL 154
+ V++L
Sbjct: 444 TSSKVVVL 451
>AT5G22730.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:7551632-7553219
REVERSE LENGTH=466
Length = 466
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 22 FDSIPDVFMNLKQLEVSWGIYYWDRLITFLHHCPQLEQLIICKDTLTSPKPQHEWNPI-- 79
FD +P F NL +L+ +Y+ + L T L CP L+ L++ + Q E PI
Sbjct: 336 FDPLPQ-FCNLSRLKAEISLYFLEILPTILESCPNLKSLVMVLEFYL----QEEDEPIIF 390
Query: 80 ---PDTPLEHLKFFCMKNYVGSDIELEIIGYVLKNAIMLETLKIYFAGSLPSNKVRDQIV 136
P + L+ +K + G ++E+ Y L+N+ +L+ L ++ S + I+
Sbjct: 391 SSVPRCLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQKLVLHLRCSTHEDGF--YIL 448
Query: 137 KSLSKLPTTSKNCHVLL 153
K L LP S C +++
Sbjct: 449 KDLLALPRGSSTCRIVV 465
>AT5G56820.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:22976334-22977838
FORWARD LENGTH=435
Length = 435
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 45 DRLITFLHHCPQLEQLIICKDTLTSPKPQ-----HEWNPIPDTPLEHLKFFCMKNYVGSD 99
DR+++ L H P L+ L + + L S K Q + N +P+ HL+ + Y G
Sbjct: 308 DRILSLLKHSPNLQTLKLNEKPLRSIKDQPNISVRKPNSVPECLTFHLETLEWQGYAGRP 367
Query: 100 IELEIIGYVLKNAIMLETLKI--YFAGS-LPSNKVRD-QIVKSLSKLPTTSKNCHVLL 153
+ EI Y+L NA+ L T I YF+ S ++ +D +IV+ L + S +C ++L
Sbjct: 368 EDKEIAVYILGNALRLNTATISRYFSSSRFRHHQKKDLKIVEELKSITKASTSCQLVL 425