Miyakogusa Predicted Gene
- Lj0g3v0282509.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0282509.1 Non Chatacterized Hit- tr|Q8H6I9|Q8H6I9_MAIZE
Putative oligouridylate binding protein OS=Zea mays
GN,26.96,0.000000000000003,RNA-binding domain, RBD,NULL; no
description,Nucleotide-binding, alpha-beta plait; seg,NULL;
RRM_1,R,CUFF.18812.1
(416 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 541 e-154
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 540 e-153
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 523 e-149
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 509 e-145
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 504 e-143
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 140 2e-33
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 135 8e-32
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 134 1e-31
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 132 4e-31
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 131 8e-31
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 130 2e-30
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 128 7e-30
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 126 3e-29
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 122 7e-28
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 118 7e-27
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 116 3e-26
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 112 5e-25
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 112 6e-25
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 112 6e-25
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 112 6e-25
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 106 2e-23
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 105 6e-23
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 103 2e-22
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 103 2e-22
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 101 1e-21
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 100 2e-21
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 98 1e-20
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 89 5e-18
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 5e-17
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 85 8e-17
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 2e-15
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 2e-15
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 80 3e-15
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 3e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 3e-13
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 5e-13
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 70 2e-12
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 70 2e-12
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 70 2e-12
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 69 6e-12
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 9e-12
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 67 2e-11
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 66 6e-11
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 66 6e-11
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 66 6e-11
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 65 6e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 7e-11
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 64 1e-10
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 64 2e-10
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 64 2e-10
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 63 3e-10
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 7e-10
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 7e-10
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 7e-10
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 7e-10
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-10
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 62 1e-09
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 62 1e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 1e-09
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 1e-09
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 2e-09
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 60 2e-09
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 60 2e-09
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-09
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 58 1e-08
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 58 1e-08
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 2e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-08
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-08
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-08
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-08
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-08
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 57 3e-08
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 57 3e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 57 3e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 56 4e-08
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 56 4e-08
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 56 5e-08
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 56 5e-08
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 56 6e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 56 6e-08
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 55 8e-08
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 55 8e-08
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 54 2e-07
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 6e-07
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 52 7e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-07
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 270/403 (66%), Positives = 306/403 (75%), Gaps = 10/403 (2%)
Query: 15 SLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEG 74
SLYH P LL PPQIEPI SGNLPPGFD STCRSVYVGNIH QVT+ LLQE+FAG G +E
Sbjct: 24 SLYH-PGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVES 82
Query: 75 CKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIF 134
CKLIRKEKSSYGFV Y+DR SA AI++LNGR+LFGQPIKVNWAYA QREDTS HFNIF
Sbjct: 83 CKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIF 142
Query: 135 VGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTG 194
VGDLSPEVTDA L+ CFS YP+CSDARVMWDQ+TGRSRGFGFVSFRNQQDAQ+AI+++TG
Sbjct: 143 VGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202
Query: 195 KWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPEKNPQYTTV 253
KWLGSRQIRCNWA+KGA + ++KQSSDSK+VVELT+G S ++ TN +APE N QYTTV
Sbjct: 203 KWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTV 262
Query: 254 YVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR-V 312
YVGNLAPEV+ VDLH+HFHSLGAG IE+VRVQRDKGFGFVRYSTH EAALAIQMGN
Sbjct: 263 YVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSY 322
Query: 313 LFGKPIKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXFSLASLAAYERQMALSRMNGAHA 372
L G+ +KCSWGSK FS + L AYERQ+A+S+M G +
Sbjct: 323 LSGRQMKCSWGSK---PTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNP 379
Query: 373 ALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
+ QG Q+ YD G+Q Q LMYY
Sbjct: 380 MMHHPQG-QHAFKQAAMGATGSNQAIYDGGYQ---NAQQLMYY 418
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/402 (66%), Positives = 305/402 (75%), Gaps = 11/402 (2%)
Query: 15 SLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEG 74
SLYH P LL PPQIEPI SGNLPPGFD STCRSVYVGNIH QVT+ LLQE+FAG G +E
Sbjct: 24 SLYH-PGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVES 82
Query: 75 CKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIF 134
CKLIRKEKSSYGFV Y+DR SA AI++LNGR+LFGQPIKVNWAYA QREDTS HFNIF
Sbjct: 83 CKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIF 142
Query: 135 VGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTG 194
VGDLSPEVTDA L+ CFS YP+CSDARVMWDQ+TGRSRGFGFVSFRNQQDAQ+AI+++TG
Sbjct: 143 VGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202
Query: 195 KWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVY 254
KWLGSRQIRCNWA+KGA + ++KQSSDSK+VVELT+G ++ TN +APE N QYTTVY
Sbjct: 203 KWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGD--GKDTTNGEAPENNAQYTTVY 260
Query: 255 VGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR-VL 313
VGNLAPEV+ VDLH+HFHSLGAG IE+VRVQRDKGFGFVRYSTH EAALAIQMGN L
Sbjct: 261 VGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYL 320
Query: 314 FGKPIKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXFSLASLAAYERQMALSRMNGAHAA 373
G+ +KCSWGSK FS + L AYERQ+A+S+M G +
Sbjct: 321 SGRQMKCSWGSK---PTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPM 377
Query: 374 LLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
+ QG Q+ YD G+Q Q LMYY
Sbjct: 378 MHHPQG-QHAFKQAAMGATGSNQAIYDGGYQ---NAQQLMYY 415
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/403 (64%), Positives = 298/403 (73%), Gaps = 7/403 (1%)
Query: 15 SLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEG 74
SLYH P +L PPQ+EP+ SGNLPPGFD STCRSVYVGNIH QVT+ LLQE+F G +E
Sbjct: 29 SLYH-PGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVES 87
Query: 75 CKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIF 134
KLIRK+KSSYGFV Y+DR SAA AI++LNGR+LFGQPIKVNWAYA QREDTS HFNIF
Sbjct: 88 SKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIF 147
Query: 135 VGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTG 194
VGDLSPEVTDATLY FS + SCSDARVMWDQ+TGRSRGFGFVSFRNQQDAQ+AIN++ G
Sbjct: 148 VGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207
Query: 195 KWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPEKNPQYTTV 253
KWL SRQIRCNWA+KGA + D+K SSD K+VVELT G+S +E N++ PE N Q+TTV
Sbjct: 208 KWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTV 267
Query: 254 YVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR-V 312
YVGNLAPEVT +DLH++FH+LGAG IE+VRVQRDKGFGFVRY+TH EAALAIQMGN +
Sbjct: 268 YVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPY 327
Query: 313 LFGKPIKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXFSLASLAAYERQMALSRMNGAHA 372
LF + IKCSWG+K S A L YERQ+ALS+M +
Sbjct: 328 LFNRQIKCSWGNK---PTPPGTASNPLPPPAPAPVPGLSAADLLNYERQLALSKMASVN- 383
Query: 373 ALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
AL+ QQG YD GFQ V Q LMYY
Sbjct: 384 ALMHQQGQHPLRQAHGINAAGATAAMYDGGFQNVAAAQQLMYY 426
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/408 (61%), Positives = 301/408 (73%), Gaps = 13/408 (3%)
Query: 11 MMQHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAG 70
M QH +HP ++ PPQ+EP+ SGNLPPGFD +TCRSVY GNIH QVT+ LLQE+FA G
Sbjct: 28 MQQHPSLYHPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTG 87
Query: 71 ALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGH 130
+E CKLIRK+KSSYGFV Y+DR A+ AI+TLNGR++FGQP+KVNWAYA QREDTS H
Sbjct: 88 PIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSH 147
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
FNIFVGDLSPEVTDA L+ FSA+ SCSDARVMWDQ+TGRSRGFGFVSFRNQQDAQ+AIN
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Query: 191 DLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPEKNPQ 249
++ GKW+ SRQIRCNWA+KGA ++K SSD K+VVELTNG+S +E++N+DAPE NPQ
Sbjct: 208 EMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQ 267
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGN 309
+TTVYVGNL+PEVT +DLH+ F++LGAG IE+VRVQRDKGFGFVRY+TH EAALAIQMGN
Sbjct: 268 FTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGN 327
Query: 310 AR-VLFGKPIKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXFSLASLAAYERQMALSRMN 368
A+ LF + I+CSWG+K S L AYERQ+AL++M+
Sbjct: 328 AQPFLFSRQIRCSWGNK---PTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAKMH 384
Query: 369 GAHAALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTT-QHLMYY 415
L+Q G YD G+Q V Q LMYY
Sbjct: 385 PQAQHSLRQAGL-------GVNVAGGTAAMYDGGYQNVAAAHQQLMYY 425
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/412 (60%), Positives = 301/412 (73%), Gaps = 17/412 (4%)
Query: 11 MMQHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAG 70
M QH +HP ++ PPQ+EP+ SGNLPPGFD +TCRSVY GNIH QVT+ LLQE+FA G
Sbjct: 28 MQQHPSLYHPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTG 87
Query: 71 ALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGH 130
+E CKLIRK+KSSYGFV Y+DR A+ AI+TLNGR++FGQP+KVNWAYA QREDTS H
Sbjct: 88 PIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSH 147
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCS----DARVMWDQQTGRSRGFGFVSFRNQQDAQ 186
FNIFVGDLSPEVTDA L+ FSA+ SCS DARVMWDQ+TGRSRGFGFVSFRNQQDAQ
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207
Query: 187 SAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPE 245
+AIN++ GKW+ SRQIRCNWA+KGA ++K SSD K+VVELTNG+S +E++N+DAPE
Sbjct: 208 TAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPE 267
Query: 246 KNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAI 305
NPQ+TTVYVGNL+PEVT +DLH+ F++LGAG IE+VRVQRDKGFGFVRY+TH EAALAI
Sbjct: 268 NNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAI 327
Query: 306 QMGNAR-VLFGKPIKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXFSLASLAAYERQMAL 364
QMGNA+ LF + I+CSWG+K S L AYERQ+AL
Sbjct: 328 QMGNAQPFLFSRQIRCSWGNK---PTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLAL 384
Query: 365 SRMNGAHAALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTT-QHLMYY 415
++M+ L+Q G YD G+Q V Q LMYY
Sbjct: 385 AKMHPQAQHSLRQAGL-------GVNVAGGTAAMYDGGYQNVAAAHQQLMYY 429
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 155/290 (53%), Gaps = 16/290 (5%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAI 100
++++VG++ + ++ L F+ G + K+IR + +S YGFV++ R++A +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166
Query: 101 VTLNGRNL--FGQPIKVNWA-YARSQRE--DTSGHFNIFVGDLSPEVTDATLYACFS-AY 154
+G + QP ++NWA ++ ++ + ++FVGDLSP+VTD L+ FS Y
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRY 226
Query: 155 PSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAN 214
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + +RQ+R A+
Sbjct: 227 PSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIA 286
Query: 215 DEKQSSDSKNVVELTNGTSGSQEI-TNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS 273
+++Q S ++ +G++GS + D N T++VG + P+V DL Q F
Sbjct: 287 NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN---ATIFVGGIDPDVIDEDLRQPFSQ 343
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
G + V++ KG GFV+++ A AI+ N V+ ++ SWG
Sbjct: 344 FGE--VVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG 391
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 154/290 (53%), Gaps = 21/290 (7%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRSSAAFAI 100
++++VG++ + ++ L F+ + K+IR +++ YGFV++ RS+A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 101 VTLNGRNLFG--QPIKVNWA---YARSQREDTSGHFNIFVGDLSPEVTDATLYACFSA-Y 154
+ +G + QP ++NWA + + +IFVGDL+P+V+DA L F+ Y
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 155 PSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAS-KGANA 213
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + SRQ+R A+ K A A
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 214 NDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS 273
++ S + + L G G+ +++ ++ +T++VG L +VT DL Q F
Sbjct: 298 YGQQNGSQA---LTLAGGHGGNGSMSDGES-----NNSTIFVGGLDADVTEEDLMQPFSD 349
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
G + V++ KG GFV+++ A AI N V+ ++ SWG
Sbjct: 350 FGE--VVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWG 397
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 15/311 (4%)
Query: 21 ALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK 80
A++ PPQ P S + P + R++++G++ V ++ L F+ G L K+IR
Sbjct: 2 AMMHPPQ-PPQGSYHHPQTLEE--VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 81 ----EKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPI--KVNWA-YARSQREDTSGHFNI 133
+ YGF+++ ++A + T NG + G + ++NWA + Q+ D +I
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSI 118
Query: 134 FVGDLSPEVTDATLYACFSA-YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
FVGDL+P+VTD L F Y S A+V+ D TGRS+G+GFV F + + A+ ++
Sbjct: 119 FVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEM 178
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDA-PEKNPQYT 251
G + +R +R + A+ N ++Q +K V +T ++ + + A PE + T
Sbjct: 179 NGLYCSTRPMRISAATPKKNVGVQQQYV-TKAVYPVTVPSAVAAPVQAYVAPPESDVTCT 237
Query: 252 TVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR 311
T+ V NL VT +L + F LG + V++ KG+G+V++ T A A+Q +
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGE--VIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQ 295
Query: 312 VLFGKPIKCSW 322
V+ + ++ SW
Sbjct: 296 VIGQQAVRISW 306
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 160/311 (51%), Gaps = 19/311 (6%)
Query: 21 ALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK 80
A++ PPQ P S + P + R++++G++ V ++ L F+ G L K+IR
Sbjct: 2 AMMHPPQ-PPQGSYHHPQTLEE--VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 81 ----EKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPI--KVNWA-YARSQREDTSGHFNI 133
+ YGF+++ ++A + T NG + G + ++NWA + Q+ D +I
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSI 118
Query: 134 FVGDLSPEVTDATLYACFSA-YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
FVGDL+P+VTD L F Y S A+V+ D TGRS+G+GFV F + + A+ ++
Sbjct: 119 FVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEM 178
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDA-PEKNPQYT 251
G + +R +R + A+ N ++Q V ++T ++ + + A PE + T
Sbjct: 179 NGLYCSTRPMRISAATPKKNVGVQQQ-----YVTKVTVPSAVAAPVQAYVAPPESDVTCT 233
Query: 252 TVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR 311
T+ V NL VT +L + F LG + V++ KG+G+V++ T A A+Q +
Sbjct: 234 TISVANLDQNVTEEELKKAFSQLGE--VIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQ 291
Query: 312 VLFGKPIKCSW 322
V+ + ++ SW
Sbjct: 292 VIGQQAVRISW 302
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 148/288 (51%), Gaps = 27/288 (9%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSY----GFVDYYDRSSAAFAI 100
RS+++G++ P + ++ L +F G K+IR +++ Y GF+++ + ++A +
Sbjct: 79 IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 101 VTLNGRNLFG--QPIKVNWAY--ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSA-YP 155
T NG + Q ++NWA A +R+ +FVGDL+P+VTD L F A Y
Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYS 198
Query: 156 SCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAND 215
S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ SR +R A+ +
Sbjct: 199 SVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAA------N 252
Query: 216 EKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLG 275
+K + + T G SG E +P TT++VG + VT DL F
Sbjct: 253 KKPLTMQPASYQNTQGNSG----------ESDPTNTTIFVGAVDQSVTEDDLKSVFGQF- 301
Query: 276 AGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
G + V++ K GFV+Y+ A A A+ + N L G+ I+ SWG
Sbjct: 302 -GELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 26/186 (13%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGA-GALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
+V+VG++ P VTD +L E F +++G K++ + YGFV + D S A+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 102 TLNGRNLFGQPIKVNWA------------YARSQR---EDTSGHFNIFVGDLSPEVTDAT 146
+NG+ +P++ A Y +Q E + IFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 147 LYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 206
L + F + ++ ++ G FV + N+ A+ A++ L G LG + IR +W
Sbjct: 294 LKSVFGQFGELVHVKIPAGKRCG------FVQYANRACAEQALSVLNGTQLGGQSIRLSW 347
Query: 207 ASKGAN 212
+N
Sbjct: 348 GRSPSN 353
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 144/290 (49%), Gaps = 28/290 (9%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALE--GCKLIRKEKSS----YGFVDYYDRSSAAFA 99
++++VG++H + ++ L FA E K+IR + + YGFV++ A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 100 IVTLNGRNL--FGQPIKVNWA---YARSQREDTSGHFNIFVGDLSPEVTDATLYACFS-A 153
+ NG + QP ++NWA + E+ +IFVGDLSP+V+D L+ FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 154 YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANA 213
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R A+
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 214 NDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS 273
++Q + NGT +T PE + TT++VG L VT DL Q F+
Sbjct: 281 GYQQQGG------YMPNGT-----LTR---PEGDIMNTTIFVGGLDSSVTDEDLKQPFNE 326
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
G I V++ KG GFV++ A A++ N V+ + ++ SWG
Sbjct: 327 FGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWG 374
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 28/188 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGA-GALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
S++VG++ P V+D+LL E F+ +++ K++ + YGFV + D + A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 102 TLNGRNLFGQPIKVNWAYAR-----------------SQREDTSGHFNIFVGDLSPEVTD 144
+NG + +++ A R ++ E + IFVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
L F+ + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 205 NWASKGAN 212
+W AN
Sbjct: 372 SWGRNPAN 379
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 153/300 (51%), Gaps = 28/300 (9%)
Query: 34 GNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK----EKSSYGFVD 89
G+ PG +S +S+++G++ + ++ + +FA +G K+IR + YGF++
Sbjct: 49 GSQNPG-SASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIE 107
Query: 90 YYDRSSAAFAIVTLNGRNLFG--QPIKVNWAYARS--QREDTSG-HFNIFVGDLSPEVTD 144
+ S A + T NG + Q ++NWA A + +R T G IFVGDL+PEVTD
Sbjct: 108 FVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTD 167
Query: 145 ATLYACF-SAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 203
L F + Y S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ +R +R
Sbjct: 168 YMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMR 227
Query: 204 CNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVT 263
G AN KN + + + Q +A + +P TT++VG L VT
Sbjct: 228 I-----GPAAN--------KNALPMQ--PAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 264 SVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
+L F G + V++ K GFV+Y+ A A A+ + N L G+ I+ SWG
Sbjct: 273 DDELKSIFGQF--GELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWG 330
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGA-GALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
+++VG++ P+VTD +L + F G+++G K++ + YGFV + D + A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 102 TLNGRNLFGQPIKVNWAYAR-------SQREDTSG---------HFNIFVGDLSPEVTDA 145
+NG+ +P+++ A + + ++T G + IFVG L VTD
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 146 TLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 205
L + F + ++ + GFV + N+ A+ A++ L G LG + IR +
Sbjct: 275 ELKSIFGQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLS 328
Query: 206 WASKGANANDEKQ 218
W +D+ Q
Sbjct: 329 WGRSPNKQSDQAQ 341
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 152/314 (48%), Gaps = 35/314 (11%)
Query: 19 HPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI 78
+P PP ++P + + R++++G++ + ++ L FA G + K+I
Sbjct: 44 NPQAAAPPSVQPTTADEI---------RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVI 94
Query: 79 RKEKSS----YGFVDYYDRSSAAFAIVTLNGRNLFGQP---IKVNWAYARS-QREDTSGH 130
R +++ YGF+++ ++A + T N + P ++NWA S + D S
Sbjct: 95 RNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPD 154
Query: 131 FNIFVGDLSPEVTDATLYACFSA-YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ IFVGDL+ +VTD L F A YPS A+V+ D+ TGR++G+GFV F ++ + A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
++ G +R +R A+ ++ S S + +T D+ +P
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSS-----------AAGVTTDN----DPN 259
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGN 309
TTV+VG L VT L F G I V++ K GFV++S + A A++M N
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQY--GEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLN 317
Query: 310 ARVLFGKPIKCSWG 323
L G ++ SWG
Sbjct: 318 GVQLGGTTVRLSWG 331
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 31/202 (15%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELF-AGAGALEGCKLI----RKEKSSYGFVDYYDRSS 95
D S +++VG++ VTD +L E F A +++G K++ YGFV + D S
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 96 AAFAIVTLNGRNLFGQPIKVNWAYARS----QRE------------DTSGHFNIFVGDLS 139
A+ +NG +P+++ A ++ QR+ + + +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 140 PEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 199
VTD L FS Y ++ ++ G FV F + A+ A+ L G LG
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQFSEKSCAEEALRMLNGVQLGG 323
Query: 200 RQIRCNWASKGANANDEKQSSD 221
+R +W +N KQS D
Sbjct: 324 TTVRLSWGRSPSN----KQSGD 341
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 139/290 (47%), Gaps = 28/290 (9%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALE--GCKLIRKEKSS----YGFVDYYDRSSAAFA 99
++++VG++ + ++ L F A E K+IR + + YGFV++ A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 100 IVTLNGRNL--FGQPIKVNWA---YARSQREDTSGHFNIFVGDLSPEVTDATLYACFS-A 153
+ NG + QP ++NWA + E+ +IFVGDL+P+V+DA L+ FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 154 YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANA 213
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R A+
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 214 NDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS 273
++Q G S T + N TT++VG L VT DL Q F
Sbjct: 283 GYQQQG-----------GYMPSGAFTRSEGDTIN---TTIFVGGLDSSVTDEDLKQPFSE 328
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
G I V++ KG GFV++ A A++ N V+ + ++ SWG
Sbjct: 329 FGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWG 376
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 28/188 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGA-GALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
S++VG++ P V+D+LL E F+ +++ K++ + YGFV + D + A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 102 TLNGRNLFGQPIKVNWAYAR-----------------SQREDTSGHFNIFVGDLSPEVTD 144
+NG + +++ A R ++ E + + IFVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
L FS + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 320 EDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Query: 205 NWASKGAN 212
+W AN
Sbjct: 374 SWGRNPAN 381
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVT 102
+VYVG + Q+++ LL ELF AG + + + ++ YGF++Y A +AI
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPS-CSDAR 161
LN L G+PI+VN A + D N+F+G+L P+V + LY FSA+ S+ +
Sbjct: 86 LNMIKLHGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 162 VMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSD 221
+M D TG SRGFGF+S+ + + + +AI +TG++L +RQI ++A K + E+ +
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK-KDTKGERHGTP 202
Query: 222 SKNVVELTNGTS 233
++ ++ TN T+
Sbjct: 203 AERLLAATNPTA 214
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 51/227 (22%)
Query: 105 GRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMW 164
G NL GQ ++ + +D + ++VG L ++++ L+ F + V
Sbjct: 10 GANLLGQ-------HSAERNQDAT----VYVGGLDAQLSEELLWELFVQAGPVVNVYVPK 58
Query: 165 DQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKN 224
D+ T + +GF+ +R+++DA AI L L + IR N AS+ +K+S D
Sbjct: 59 DRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQ------DKKSLDVG- 111
Query: 225 VVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV 284
+++GNL P+V L+ F + G + ++
Sbjct: 112 --------------------------ANLFIGNLDPDVDEKLLYDTFSAFGV-IASNPKI 144
Query: 285 QRD------KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSK 325
RD +GFGF+ Y + + AI+ + L + I S+ K
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK 191
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 26/280 (9%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS--YGFVDYYDRSSAAFAIVTLN 104
++YV N+ +T S L+ +F G++ CK++ + S +GFV + SA A L+
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 105 GRNLFGQPIKVNWAYARSQREDTSGH---FNIFVGDLSPEVTDATLYACFSAYPSCSDAR 161
G ++G+ + V + +R +G+ N++V +L VTD L+ FS Y + S
Sbjct: 173 GSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVV 232
Query: 162 VMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSD 221
VM D GRSRGFGFV+F N ++A+ A+ L G LGS+++ A K DE++
Sbjct: 233 VMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK----KDERR--- 284
Query: 222 SKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIED 281
E+ Q+ +++ + N +++ +YV NL+ + L + F G
Sbjct: 285 -----EMLK-----QKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAK 334
Query: 282 VRVQ---RDKGFGFVRYSTHAEAALAIQMGNARVLFGKPI 318
V R KGFGFV +S E+ A + N ++ GKPI
Sbjct: 335 VMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 55/293 (18%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK----EKSSYGFVDYYDRSSAAFAIVT 102
S+YVG++ P VT+ L + F+ + L R + Y ++++ SA+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 103 LNGRNLFGQPIKVNW-----AYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSC 157
LN +L G+ +++ W AY R R +G N++V +L +T + L F + S
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTR---TGFANLYVKNLDSSITSSCLERMFCPFGSI 138
Query: 158 SDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEK 217
+V+ ++ G+S+GFGFV F +Q A SA + L G + +++ + +K N DE+
Sbjct: 139 LSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL---FVAKFIN-KDER 192
Query: 218 QSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAG 277
+ +G+Q+ TN VYV NL VT LH F G
Sbjct: 193 AA------------MAGNQDSTN------------VYVKNLIETVTDDCLHTLFSQY--G 226
Query: 278 TIEDVRVQRD-----KGFGFVRY------STHAEAALAIQMGNARVLFGKPIK 319
T+ V V RD +GFGFV + E+ +Q+G+ ++ GK +K
Sbjct: 227 TVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 35/287 (12%)
Query: 19 HPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI 78
+P PP ++P + + R++++G++ + ++ L FA G + K+I
Sbjct: 44 NPQAAAPPSVQPTTADEI---------RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVI 94
Query: 79 RKEKSS----YGFVDYYDRSSAAFAIVTLNGRNLFGQP---IKVNWAYARS-QREDTSGH 130
R +++ YGF+++ ++A + T N + P ++NWA S + D S
Sbjct: 95 RNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPD 154
Query: 131 FNIFVGDLSPEVTDATLYACFSA-YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ IFVGDL+ +VTD L F A YPS A+V+ D+ TGR++G+GFV F ++ + A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
++ G +R +R A+ ++ S S + +T D+ +P
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSS-----------AAGVTTDN----DPN 259
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYS 296
TTV+VG L VT L F G I V++ K GFV++S
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQY--GEIVHVKIPAGKRCGFVQFS 304
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 32/300 (10%)
Query: 38 PGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI---RKEKSSYGFVDYYDRS 94
P S ++++ N+ + L E F+ G + CK+ + YGFV Y
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDE 184
Query: 95 SAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGH----FNIFVGDLSPEVTDATLYAC 150
+A AI LNG L + + V + QR D SG N++V +LS ++D L
Sbjct: 185 AAQGAIDKLNGMLLNDKQVYVGPFVHKLQR-DPSGEKVKFTNVYVKNLSESLSDEELNKV 243
Query: 151 FSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKG 210
F + + +M D + G+S+GFGFV+F N DA A++ L GK ++ A K
Sbjct: 244 FGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK 302
Query: 211 ANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQH 270
+ E + +++ E + + GS +YV NL VT L +H
Sbjct: 303 SERETELKQKFEQSLKEAADKSQGS----------------NLYVKNLDESVTDDKLREH 346
Query: 271 FHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSK 325
F GTI +V RD +G GFV +ST EA AI N +++ KP+ + +
Sbjct: 347 FAPF--GTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 125/279 (44%), Gaps = 41/279 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIR----KEKSSYGFVDYYDRSSAAFAIVT 102
S+YVG++ VTDS L E F AG + ++ R + YG+V+Y A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARV 162
LN L G+ I+V ++ R SG NIF+ +L + L+ FSA+ +V
Sbjct: 106 LNFMALNGRAIRVMYS-VRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 163 MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDS 222
D +G+S+G+GFV + + AQ AI+ L G L +Q+
Sbjct: 165 AVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV-----------------G 206
Query: 223 KNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV 282
V +L SG + ++T VYV NL+ ++ +L++ F G T
Sbjct: 207 PFVHKLQRDPSGEKV-----------KFTNVYVKNLSESLSDEELNKVFGEFGVTT--SC 253
Query: 283 RVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGK 316
+ RD KGFGFV + +AA A+ N + K
Sbjct: 254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 39/195 (20%)
Query: 129 GHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSA 188
G +++VGDL VTD+ L+ F+ RV D T RS G+G+V++ QDA A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 189 INDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNP 248
+N+L L R IR ++ + D +
Sbjct: 103 LNELNFMALNGRAIRVMYSVR--------------------------------DPSLRKS 130
Query: 249 QYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAAL 303
+++ NL + LH+ F + G I +V D KG+GFV+Y T A
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGP--ILSCKVAVDPSGQSKGYGFVQYDTDEAAQG 188
Query: 304 AIQMGNARVLFGKPI 318
AI N +L K +
Sbjct: 189 AIDKLNGMLLNDKQV 203
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 32/300 (10%)
Query: 38 PGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI---RKEKSSYGFVDYYDRS 94
P S ++++ N+ + L E F+ G + CK+ + YGFV Y
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDE 184
Query: 95 SAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGH----FNIFVGDLSPEVTDATLYAC 150
+A AI LNG L + + V + QR D SG N++V +LS ++D L
Sbjct: 185 AAQGAIDKLNGMLLNDKQVYVGPFVHKLQR-DPSGEKVKFTNVYVKNLSESLSDEELNKV 243
Query: 151 FSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKG 210
F + + +M D + G+S+GFGFV+F N DA A++ L GK ++ A K
Sbjct: 244 FGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK 302
Query: 211 ANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQH 270
+ E + +++ E + + GS +YV NL VT L +H
Sbjct: 303 SERETELKQKFEQSLKEAADKSQGS----------------NLYVKNLDESVTDDKLREH 346
Query: 271 FHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSK 325
F GTI +V RD +G GFV +ST EA AI N +++ KP+ + +
Sbjct: 347 FAPF--GTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 125/279 (44%), Gaps = 41/279 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIR----KEKSSYGFVDYYDRSSAAFAIVT 102
S+YVG++ VTDS L E F AG + ++ R + YG+V+Y A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARV 162
LN L G+ I+V ++ R SG NIF+ +L + L+ FSA+ +V
Sbjct: 106 LNFMALNGRAIRVMYS-VRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 163 MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDS 222
D +G+S+G+GFV + + AQ AI+ L G L +Q+
Sbjct: 165 AVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV-----------------G 206
Query: 223 KNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV 282
V +L SG + ++T VYV NL+ ++ +L++ F G T
Sbjct: 207 PFVHKLQRDPSGEKV-----------KFTNVYVKNLSESLSDEELNKVFGEFGVTT--SC 253
Query: 283 RVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGK 316
+ RD KGFGFV + +AA A+ N + K
Sbjct: 254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 39/195 (20%)
Query: 129 GHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSA 188
G +++VGDL VTD+ L+ F+ RV D T RS G+G+V++ QDA A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 189 INDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNP 248
+N+L L R IR ++ + D +
Sbjct: 103 LNELNFMALNGRAIRVMYSVR--------------------------------DPSLRKS 130
Query: 249 QYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAAL 303
+++ NL + LH+ F + G I +V D KG+GFV+Y T A
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGP--ILSCKVAVDPSGQSKGYGFVQYDTDEAAQG 188
Query: 304 AIQMGNARVLFGKPI 318
AI N +L K +
Sbjct: 189 AIDKLNGMLLNDKQV 203
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 131/290 (45%), Gaps = 30/290 (10%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK---EKSSYGFVDYYDRSSAAFAIVTL 103
+++V N+ V + L E F+G G + CK+ + YGFV + SA AI L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 104 NGRNLFGQPIKVNWAYARSQRE---DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDA 160
NG+ L + I V + +RE D N++V +LS TD L F Y S S A
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSA 254
Query: 161 RVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSS 220
VM D G+SR FGFV+F N +DA A+ L GK ++ W A E++
Sbjct: 255 VVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKE----WYVGKAQKKSERELE 309
Query: 221 DSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIE 280
S+ + ++ + N +YV NL VT L + F G TI
Sbjct: 310 LSRRYEQGSSDGGNKFDGLN------------LYVKNLDDTVTDEKLRELFAEFG--TIT 355
Query: 281 DVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSK 325
+V RD KG GFV +S +EA+ + N +++ GKP+ + +
Sbjct: 356 SCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 124/274 (45%), Gaps = 41/274 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVT 102
S+YVG++ VTDS L + F + ++ R ++ YG+V+Y + A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARV 162
LN L G+ I++ ++ S SG N+FV +L V + TL+ FS + +V
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSAR-RSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 163 MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDS 222
D G+SRG+GFV F + A++AI L GK L +QI + +E++S+
Sbjct: 166 ATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLR----KEERESAAD 220
Query: 223 KNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV 282
K ++T VYV NL+ T +L F G+I
Sbjct: 221 KM------------------------KFTNVYVKNLSEATTDDELKTTFGQY--GSISSA 254
Query: 283 RVQRD-----KGFGFVRYSTHAEAALAIQMGNAR 311
V RD + FGFV + +AA A++ N +
Sbjct: 255 VVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK 288
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK---EKSSYGFVDYYDRSSAA 97
D +VYV N+ TD L+ F G++ ++R + +GFV++ + AA
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 279
Query: 98 FAIVTLNGRNLFGQPIKVNWAYARSQRE------------DTSGHF---NIFVGDLSPEV 142
A+ LNG+ + V A +S+RE D F N++V +L V
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTV 339
Query: 143 TDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 202
TD L F+ + + + +VM D +G S+G GFV+F +A +N++ GK +G + +
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPL 398
Query: 203 RCNWASK 209
A +
Sbjct: 399 YVALAQR 405
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 30/299 (10%)
Query: 31 IMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI---RKEKSSYGF 87
+M + P S ++++ N+ + L + F+ G + CK+ + YGF
Sbjct: 109 VMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGF 168
Query: 88 VDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHF---NIFVGDLSPEVTD 144
V Y + SA AI LNG L + + V R +R+ T+ N++V +L+ TD
Sbjct: 169 VQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTD 228
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
L F Y + A VM D + G+S+GFGFV+F N DA A+ L G ++
Sbjct: 229 DDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287
Query: 205 NWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTS 264
A K + E + +N+ E + Q + +YV NL P ++
Sbjct: 288 GRAQKKSERETELRVRYEQNLKEAADKF----------------QSSNLYVKNLDPSISD 331
Query: 265 VDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPI 318
L + F GT+ +V RD KG GFV ++T EA A+ + +++ KP+
Sbjct: 332 EKLKEIFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPL 388
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 41/269 (15%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCK----LIRKEKSSYGFVDYYDRSSAAFAIVT 102
S+YVG++ VTDS L + F G + + L+ + YG+V++ + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARV 162
LN L+G+PI+V +++ R SG NIF+ +L + L+ FS++ + +V
Sbjct: 97 LNYIPLYGKPIRVMYSH-RDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKV 155
Query: 163 MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDS 222
D +G+S+G+GFV + N++ AQ AI L G L +Q+ + E+ S+ +
Sbjct: 156 AVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR----RQERDSTAN 210
Query: 223 KNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV 282
K ++T VYV NLA T DL F G I
Sbjct: 211 KT------------------------KFTNVYVKNLAESTTDDDLKNAFGEY--GKITSA 244
Query: 283 RVQRD-----KGFGFVRYSTHAEAALAIQ 306
V +D KGFGFV + +AA A++
Sbjct: 245 VVMKDGEGKSKGFGFVNFENADDAARAVE 273
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 41/228 (17%)
Query: 98 FAIVTLNGRNLFGQPIKVNWAYARSQREDTS--GHFNIFVGDLSPEVTDATLYACFSAYP 155
A V L G+ G V A A S + G+ +++VGDL VTD+ L+ F
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 156 SCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAND 215
+ RV D T RS G+G+V+F N QDA AI +L L + IR ++ + +
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR- 119
Query: 216 EKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLG 275
SG+ I ++ NL + LH F S
Sbjct: 120 ----------------RSGAGNI---------------FIKNLDESIDHKALHDTFSSF- 147
Query: 276 AGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPI 318
G I +V D KG+GFV+Y+ A AI+ N +L K +
Sbjct: 148 -GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 127/272 (46%), Gaps = 40/272 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELF---AGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTL 103
S+Y G++ P+VT++ L +LF A ++ C+ + Y ++++ + + A A+ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVM 163
N LF +PI++ + R SG NIF+ +L + + L+ FS++ + +V
Sbjct: 110 NYTPLFDRPIRIMLS-NRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 164 WDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC-NWASKGANANDEKQSSDS 222
D TGRS+G+GFV F ++ AQ+AI+ L G + +Q+ ++ + A DE +
Sbjct: 169 MDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT-- 225
Query: 223 KNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV 282
P++T VYV NL E+ +L + F G I
Sbjct: 226 -------------------------PRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSA 258
Query: 283 RVQRDKG-----FGFVRYSTHAEAALAIQMGN 309
V RD+ FGFV + AA A++ N
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 126/306 (41%), Gaps = 28/306 (9%)
Query: 31 IMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKL---IRKEKSSYGF 87
IM N P S ++++ N+ + + L E F+ G + CK+ + YGF
Sbjct: 121 IMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGF 180
Query: 88 VDYYDRSSAAFAIVTLNGRNLFGQPIKV-----NWAYARSQREDTSGHFNIFVGDLSPEV 142
V + SA AI LNG + + + V AR + T N++V +L E+
Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI 240
Query: 143 TDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 202
+ L F + S A VM DQ +G SR FGFV+F + A SA+ + G LG +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVL 299
Query: 203 RCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEV 262
A K + +E + + + + G+ +Y+ NL V
Sbjct: 300 YVGRAQKKSEREEELRRKFEQERINRFEKSQGA----------------NLYLKNLDDSV 343
Query: 263 TSVDLHQHFHSLGAGTIEDVRVQ---RDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIK 319
L + F G T V + +GFGFV YS EA A+ N +++ KP+
Sbjct: 344 DDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 403
Query: 320 CSWGSK 325
+ +
Sbjct: 404 IALAQR 409
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 38/271 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELF---AGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTL 103
S+YVG++ P V +S L +LF A L C+ + Y +V++ + A+ A+ +L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVM 163
N + +PI++ + R SG N+F+ +L + + LY FS++ + +V
Sbjct: 120 NYAPIRDRPIRIMLSN-RDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 178
Query: 164 WDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSK 223
D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + ++ S+S
Sbjct: 179 MDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARSESG 233
Query: 224 NVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVR 283
V P +T VYV NL E+T +L + F G I
Sbjct: 234 AV----------------------PSFTNVYVKNLPKEITDDELKKTFGKY--GDISSAV 269
Query: 284 VQRD-----KGFGFVRYSTHAEAALAIQMGN 309
V +D + FGFV + + AA+A++ N
Sbjct: 270 VMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 129/306 (42%), Gaps = 28/306 (9%)
Query: 31 IMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKL---IRKEKSSYGF 87
IM N P S +V++ N+ + + L E F+ G + CK+ + YGF
Sbjct: 131 IMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGF 190
Query: 88 VDYYDRSSAAFAIVTLNGRNLFGQPIKV-----NWAYARSQREDTSGHFNIFVGDLSPEV 142
V + +A AI LNG L + + V ARS+ N++V +L E+
Sbjct: 191 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 250
Query: 143 TDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 202
TD L F Y S A VM DQ +G SR FGFV+F + + A A+ + G LG +
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Query: 203 RCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEV 262
A K ++ +E + + + GS +Y+ NL V
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKLQGS----------------NLYLKNLDDSV 353
Query: 263 TSVDLHQHFHSLGAGTIEDVRVQR---DKGFGFVRYSTHAEAALAIQMGNARVLFGKPIK 319
L + F G T V + +GFGFV YS EA LA++ N +++ KP+
Sbjct: 354 NDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 413
Query: 320 CSWGSK 325
+ +
Sbjct: 414 VALAQR 419
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 38/271 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELF---AGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTL 103
S+YVG++ P V +S L +LF A L C+ + Y +V++ + A+ A+ +L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVM 163
N + +PI++ + R SG N+F+ +L + + LY FS++ + +V
Sbjct: 120 NYAPIRDRPIRIMLSN-RDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 178
Query: 164 WDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSK 223
D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + ++ S+S
Sbjct: 179 MDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARSESG 233
Query: 224 NVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVR 283
V P +T VYV NL E+T +L + F G I
Sbjct: 234 AV----------------------PSFTNVYVKNLPKEITDDELKKTFGKY--GDISSAV 269
Query: 284 VQRD-----KGFGFVRYSTHAEAALAIQMGN 309
V +D + FGFV + + AA+A++ N
Sbjct: 270 VMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 129/306 (42%), Gaps = 28/306 (9%)
Query: 31 IMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKL---IRKEKSSYGF 87
IM N P S +V++ N+ + + L E F+ G + CK+ + YGF
Sbjct: 131 IMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGF 190
Query: 88 VDYYDRSSAAFAIVTLNGRNLFGQPIKV-----NWAYARSQREDTSGHFNIFVGDLSPEV 142
V + +A AI LNG L + + V ARS+ N++V +L E+
Sbjct: 191 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 250
Query: 143 TDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 202
TD L F Y S A VM DQ +G SR FGFV+F + + A A+ + G LG +
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Query: 203 RCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEV 262
A K ++ +E + + + GS +Y+ NL V
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKLQGS----------------NLYLKNLDDSV 353
Query: 263 TSVDLHQHFHSLGAGTIEDVRVQR---DKGFGFVRYSTHAEAALAIQMGNARVLFGKPIK 319
L + F G T V + +GFGFV YS EA LA++ N +++ KP+
Sbjct: 354 NDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 413
Query: 320 CSWGSK 325
+ +
Sbjct: 414 VALAQR 419
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 22/283 (7%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEK---SSYGFVDYYDRSSAAFAIVTL 103
+V+V N+ + + L ++F+ G + CK+ R YGFV +Y S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVM 163
NG + Q I V +R Q + + N++V +L TDA L F + + A VM
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 151
Query: 164 WDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSK 223
D + G+SR FGFV+F + A +AI + G + +++ A + N ++ D K
Sbjct: 152 KDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTN-----RTEDLK 205
Query: 224 NVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVR 283
EL ++I D K +YV NL V + L + F G T V
Sbjct: 206 AKFEL-------EKIIRDMKTRKG---MNLYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
Query: 284 VQRD---KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
V + KG GFV +ST EA+ A+ N +++ KPI S
Sbjct: 256 VHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 150/361 (41%), Gaps = 86/361 (23%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRSSAAFAIVT 102
S+YVG++HP VT+ +L + FA +L +L + S YG+ ++ R A AI
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARV 162
N L G+ I+V W+ R+ +G N+FV +L VT+A L F + + +V
Sbjct: 85 KNNSLLNGKMIRVMWS-VRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143
Query: 163 MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI-------------------- 202
+ G+SRG+GFV F + A +AI L + ++I
Sbjct: 144 AT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTN 202
Query: 203 ---------------RCNWASKG-----ANANDEKQ------------SSDSKNVVELTN 230
R +A G A A DE + D++ E N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 231 GTS-GS--------------QEITNDDAPEKNPQ------YTTVYVGNLAPEVTSVDLHQ 269
GT GS +++ + EK+ + + +YV N+ VT +L +
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 270 HFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGS 324
HF GTI ++ D KGFGFV +ST EA A++ + ++ GKP+ +
Sbjct: 323 HFSQ--CGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 325 K 325
K
Sbjct: 381 K 381
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALE--GCKLIRKEKSS----YGFVDYYDRSSAAFA 99
++++VG++H + ++ L FA E K+IR + + YGFV++ A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 100 IVTLNGRNL--FGQPIKVNWA---YARSQREDTSGHFNIFVGDLSPEVTDATLYACFS-A 153
+ NG + QP ++NWA + E+ +IFVGDLSP+V+D L+ FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 154 YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAS 208
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R A+
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 9/171 (5%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN+ V L LF AG +E ++I ++ +GFV A A+
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGH-----FNIFVGDLSPEVTDATLYACFSAYPSCS 158
N +L G+ + VN A R R + + F ++VG+L +V + L FS +
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV 271
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASK 209
+ARV++D++TGRSRGFGFV+ + + AI+ L G+ L R IR N A +
Sbjct: 272 EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN+ V + L +LF AG +E ++I + + +GFV S A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 104 NGRNLFGQPIKVNWAYARSQRED------------------------TSGHFNIFVGDLS 139
NG L G+P++VN +RED ++VG+LS
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 140 PEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 199
V D L + FS +ARV++D+ +GRS+GFGFV++ + Q+ Q+AI L G L
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 200 RQIRCNWA 207
RQIR + A
Sbjct: 273 RQIRVSEA 280
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 80/198 (40%), Gaps = 11/198 (5%)
Query: 128 SGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQS 187
S +FVG+L V A L F + + V++D+ TGRSRGFGFV+ + + ++
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 188 AINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKN 247
A G L R +R N D + +G G
Sbjct: 148 AAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAG------ 201
Query: 248 PQYTTVYVGNLAPEVTSVDLHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAEAAL 303
VYVGNL+ V + L F G A I D R KGFGFV Y + E
Sbjct: 202 -SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260
Query: 304 AIQMGNARVLFGKPIKCS 321
AI+ + L G+ I+ S
Sbjct: 261 AIKSLDGADLDGRQIRVS 278
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 9/171 (5%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN+ V L LF AG +E ++I + +GFV A A+
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 104 NGRNLFGQPIKVNWAYARSQREDT-----SGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
N + G+ + VN A R R + F I+VG+L +V L FS +
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASK 209
DARV+ D++TGRSRGFGFV N+ + AI L G+ L R I+ N A +
Sbjct: 235 DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEE 285
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 18/189 (9%)
Query: 37 PPGFDSST--CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDY 90
P D S+ R VY+GNI VT+ L +L GA+E +++ + S +GF
Sbjct: 65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
Query: 91 YDRSSAAFAIVTLNGRNLFGQPIKVNWA---------YARSQREDTS---GHFNIFVGDL 138
A + LNG + G+ IKVN + Q ED++ + ++VG+L
Sbjct: 125 KSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 139 SPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 198
+ VT L FS A+V T +S GFGFV+F +++D ++AI L L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 199 SRQIRCNWA 207
++IR N A
Sbjct: 245 GQKIRVNKA 253
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 29/195 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+++G++ VT+ L + + +VM+D+ +GRSR FGF + ++ +DA + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 193 TGKWLGSRQIRCNWASKGANANDE---KQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
G + R+I+ N K ++ + QS DS V D+P K
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFV----------------DSPYK--- 178
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV-RV---QRDKGFGFVRYSTHAEAALAI 305
VYVGNLA VT L F G V RV + GFGFV +S+ + AI
Sbjct: 179 ---VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 306 QMGNARVLFGKPIKC 320
N +L G+ I+
Sbjct: 236 VALNNSLLEGQKIRV 250
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 18/189 (9%)
Query: 37 PPGFDSST--CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDY 90
P D S+ R VY+GNI VT+ L +L GA+E +++ + S +GF
Sbjct: 65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
Query: 91 YDRSSAAFAIVTLNGRNLFGQPIKVNWA---------YARSQREDTS---GHFNIFVGDL 138
A + LNG + G+ IKVN + Q ED++ + ++VG+L
Sbjct: 125 KSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 139 SPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 198
+ VT L FS A+V T +S GFGFV+F +++D ++AI L L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 199 SRQIRCNWA 207
++IR N A
Sbjct: 245 GQKIRVNKA 253
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 29/195 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+++G++ VT+ L + + +VM+D+ +GRSR FGF + ++ +DA + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 193 TGKWLGSRQIRCNWASKGANANDE---KQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
G + R+I+ N K ++ + QS DS V D+P K
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFV----------------DSPYK--- 178
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV-RV---QRDKGFGFVRYSTHAEAALAI 305
VYVGNLA VT L F G V RV + GFGFV +S+ + AI
Sbjct: 179 ---VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 306 QMGNARVLFGKPIKC 320
N +L G+ I+
Sbjct: 236 VALNNSLLEGQKIRV 250
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+YVGN+ +T S L ++F AG + +++ + + +GFV A A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 104 NGRNLFGQPIKVNW---------AYARSQREDTSGHF-----NIFVGDLSPEVTDATLYA 149
N + G+ +KVN+ R++ D + + ++ G+L +T L
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 150 CFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASK 209
F P A+V++++ TGRSRGFGF+SF + ++ QSA+ + G + R +R N AS+
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASE 297
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 29/201 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG+L +T + L F + D ++++D+ T RSRGFGFV+ + ++A+ A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYT- 251
+G R ++ N+ E+ G G E+ + N Y
Sbjct: 178 NSSQIGGRTVKVNFP-------------------EVPRG--GENEVMRTKIRDNNRSYVD 216
Query: 252 ---TVYVGNLAPEVTSVDLHQHFHS----LGAGTIEDVRVQRDKGFGFVRYSTHAEAALA 304
VY GNL +TS L F LGA I + R +GFGF+ + + A
Sbjct: 217 SPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSA 276
Query: 305 IQMGNARVLFGKPIKCSWGSK 325
+ N + G+ ++ + S+
Sbjct: 277 LATMNGVEVEGRALRLNLASE 297
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Query: 21 ALLTPPQI--EPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI 78
A+L PP + GNLP DS+T + +P++ + L G G
Sbjct: 75 AVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNR---DTGQSRG---- 127
Query: 79 RKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDT---SGHFNIFV 135
+ FV + I L+G G+ +KVN+A ++ +FV
Sbjct: 128 ------FAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFV 181
Query: 136 GDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGK 195
G+LS VT +L F ARV++D TGRSRG+GFV + ++ + ++A+ L G
Sbjct: 182 GNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGF 241
Query: 196 WLGSRQIRCNWA 207
L R IR N A
Sbjct: 242 ELEGRAIRVNLA 253
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG LS D++L F+++ ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 193 TGKWLGSRQIRCNWASKGANA 213
GK L RQIR N A++ ++A
Sbjct: 97 DGKELNGRQIRVNLATERSSA 117
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG LS D++L F+++ ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 193 TGKWLGSRQIRCNWASKGANA 213
GK L RQIR N A++ ++A
Sbjct: 97 DGKELNGRQIRVNLATERSSA 117
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+ +F GDL EV D L F+ +P+ + A+V+ D++TG+++G+GFVSF N D +A+
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 191 DLTGKWLGSRQIRC---NWASKGANANDEKQSSDS 222
++ GK++G+R I+ +W + E+Q S
Sbjct: 197 EMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHS 231
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 193 TGKWLGSRQIRCNWAS 208
GK L R IR N A+
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 193 TGKWLGSRQIRCNWAS 208
GK L R IR N A+
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 193 TGKWLGSRQIRCNWAS 208
GK L R IR N A+
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 193 TGKWLGSRQIRCNWAS 208
GK L R IR N A+
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
IFVG LSPEVTD L FS + D ++M ++ TGRSRGFGF++F +++ +I +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 192 LTGKWLGSRQIRCNWA 207
+ G+ G R I N A
Sbjct: 68 MHGRDFGDRVISVNRA 83
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG+LSP TD L FS Y + DA VM D+ T RSRGFGFV++ + +A++A++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 193 TGKWLGSRQI 202
GK L R++
Sbjct: 65 DGKELNGRRV 74
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 251 TTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDK------GFGFVRYSTHAEAALA 304
T VYVGNL+P T L + F G G + D V RD+ GFGFV YS+H+EA A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFS--GYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 305 IQMGNARVLFGKPI 318
+ + + L G+ +
Sbjct: 61 VSGMDGKELNGRRV 74
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G ++ + + +L F+ Y D RV+ D++TGRSRGFGFV+F + + A SAI L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 193 TGKWLGSRQIRCNWA 207
G+ L R ++ N+A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ + Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 193 TGKWLGSRQIRCNWA 207
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ + Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 193 TGKWLGSRQIRCNWA 207
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ + Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 193 TGKWLGSRQIRCNWA 207
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ + Q+ Q AIN L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 193 TGKWLGSRQIRCNWA 207
G L RQIR + A
Sbjct: 340 NGADLDGRQIRVSEA 354
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I ++LL+E F+ G + ++R++ + +GFV + D A V
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD--PAVIDRVLQ 65
Query: 104 NGRNLFGQPIKVNWAYARSQREDT--SGHFN---------------IFVGDLSPEVTDAT 146
+ ++ + + V A +R ++ SG FN IFVG L P +T
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 147 LYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA----QSAINDLTGKWL 197
A F Y SDA +M DQ T R RGFGFVSF ++ +DL GK +
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L FS + VM ++ TGR RGFGFV+F + + D
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ +R + A + E+QS G SG+ + + N +
Sbjct: 68 --HHIDNRDVDVKRA-----MSREEQS---------PAGRSGTFNASRNFDSGANVRTKK 111
Query: 253 VYVGNLAPEVTSVDLHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAEAALAIQ 306
++VG L P +TS + +F + G A + D QR +GFGFV + + L +
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
IFVG +S + L FS Y DA+++ D++TGRSRGF FV+F + ++A +A+ L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 193 TGKWLGSRQIRCNWASK 209
G+ L R+IR N+A++
Sbjct: 95 DGQDLHGRRIRVNYATE 111
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+ +FVG ++ E ++ L FS Y + +A V ++ TG+ RGFGFV F N D A+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
Query: 191 D---LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVE--LTNGTSGSQEITNDDAPE 245
D + GK + R K ++ Q S +E + G +E++++
Sbjct: 66 DTHFILGKPVDVR--------KAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTS 117
Query: 246 KNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGT----IEDVRVQRDKGFGFVRYSTHAEA 301
+ + ++VG L+ T + +F G T + D R +GFGFV Y +
Sbjct: 118 RTKK---IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
Query: 302 ALAIQ 306
+ +Q
Sbjct: 175 EVVMQ 179
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 23/183 (12%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI----RKEKSSYGFVDYYDRSSAAFAIV 101
R+V+ I + T+ + E F+ AG + ++I + G+V++YD S AI
Sbjct: 182 RTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 241
Query: 102 TLNGRNLFGQPIKVNWAYARSQREDTS---------------GHFNIFVGDLSPEVTDAT 146
L+G+ L GQP+ V + A ++ G ++VG+L +++
Sbjct: 242 -LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDD 300
Query: 147 LYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCN 205
L F ++ S +V D +TG +GFGFV F +DA++A+N L G+ + R I+ +
Sbjct: 301 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 358
Query: 206 WAS 208
+
Sbjct: 359 AVT 361
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 32/198 (16%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F ++ T+ +Y FS D R++ D+ + RSRG G+V F + AI L
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 242
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYT- 251
+G+ L + + K S KN+V+ T +G+ + Y+
Sbjct: 243 SGQPLLGQPVMV------------KPSEAEKNLVQSTTAAAGAGGMLG--------PYSG 282
Query: 252 ---TVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAAL 303
+YVGNL ++ DL + F S G++E V+V RD KGFGFV+++ +A
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESF--GSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 304 AIQMGNARVLFGKPIKCS 321
A+ + + G+ IK S
Sbjct: 341 ALNLNGQLEIAGRAIKVS 358
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+F+G LS V + +L FS++ ++ R+ +D+ +GRSRGFGFV F + DA SA +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 192 LTGKWLGSRQIRCNWA 207
+ GK L R +R ++A
Sbjct: 102 MDGKGLLGRPLRISFA 117
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 23/180 (12%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI----RKEKSSYGFVDYYDRSSAAFAIV 101
R+V+ I + T+ + E F+ AG + ++I + G+V++YD S AI
Sbjct: 231 RTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI- 289
Query: 102 TLNGRNLFGQPIKVNWAYARSQREDTS---------------GHFNIFVGDLSPEVTDAT 146
L+G+ L GQP+ V + A ++ G ++VG+L +++
Sbjct: 290 ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDD 349
Query: 147 LYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCN 205
L F ++ S +V D +TG +GFGFV F +DA++A+N L G+ + R I+ +
Sbjct: 350 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 407
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F ++ T+ +Y FS D R++ D+ + RSRG G+V F + AI L
Sbjct: 233 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 291
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+G+ L + + K S KN+V+ T +G+ + +
Sbjct: 292 SGQPLLGQPVMV------------KPSEAEKNLVQSTTAAAGAGGMLG----PYSGGARR 335
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQM 307
+YVGNL ++ DL + F S G++E V+V RD KGFGFV+++ +A A+ +
Sbjct: 336 LYVGNLHINMSEDDLRKVFESF--GSVELVQVPRDETGLCKGFGFVQFARLEDARNALNL 393
Query: 308 GNARVLFGKPIKCS 321
+ G+ IK S
Sbjct: 394 NGQLEIAGRAIKVS 407
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI--- 189
+F+G +S E ++ L F ++ +A +M D+ TGR+RGFGFV F + A+ +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 190 NDLTGKWLGS--------RQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITND 241
+ + GK L R +C S+ A D + + GS +N
Sbjct: 68 HIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS 127
Query: 242 DAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGT----IEDVRVQRDKGFGFVRYST 297
++VG LA VT + ++F G T + D R QR +GFGF+ Y +
Sbjct: 128 ---------KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 178
Query: 298 HAEAALAIQ 306
+Q
Sbjct: 179 EEAVDKVLQ 187
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA----QSA 188
IFVG L+ VT+A F+ + +D VM+D +T R RGFGF+S+ +++ Q
Sbjct: 130 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 189
Query: 189 INDLTGKWL 197
++L GK +
Sbjct: 190 FHELNGKMV 198
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 30/284 (10%)
Query: 39 GFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAF 98
GF S+ +++VG++ P+ T+S L ELF G ++ ++ + F+ Y A
Sbjct: 14 GFQSN---NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVA 68
Query: 99 AIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
A L G NL G IK+ YAR + S ++VG + P V+ L FS +
Sbjct: 69 AKEALQGANLNGSQIKIE--YARPAKPCKS----LWVGGIGPNVSKDDLEEEFSKFGKIE 122
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQ 218
D R + R R F+ + DA A + GK +G +R ++ A ++
Sbjct: 123 DFRFL------RERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWA 175
Query: 219 SS-DSK--NVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS-- 273
S D++ N+ ++ D P K +++G P T + Q H+
Sbjct: 176 GSYDNRNGNMNHKPQYPHSYEDFKGDVQPSK-----VLWIG-FPPTATQCNDEQILHNAM 229
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKP 317
+ G IE V+ + F V + + AE A + G LF P
Sbjct: 230 ILFGEIERVKSYPSRNFALVEFRS-AEEARQCKEGLQGRLFNNP 272
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 35/193 (18%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLN 104
C+S++VG I P V+ L+E F+ G +E + +R+ K++ F+DYY+ A A ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDDALQA-KSMN 150
Query: 105 GRNLFGQ-----------PIKVNWAYARSQREDTSGH-------FNIFVGDLSPEVTDAT 146
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQP---SKV 207
Query: 147 LYACFSAYPS-CSDARVMWDQ----------QTGRSRGFGFVSFRNQQDAQSAINDLTGK 195
L+ F + C+D +++ + ++ SR F V FR+ ++A+ L G+
Sbjct: 208 LWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGR 267
Query: 196 WLGSRQIRCNWAS 208
+ +I+ +++
Sbjct: 268 LFNNPRIKIMYSN 280
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 35/193 (18%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLN 104
C+S++VG I P V+ L+E F+ G +E + +R+ K++ F+DYY+ A A ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDDALQA-KSMN 150
Query: 105 GRNLFGQ-----------PIKVNWAYARSQREDTSGH-------FNIFVGDLSPEVTDAT 146
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPS---KV 207
Query: 147 LYACFSAYPS-CSDARVMWDQ----------QTGRSRGFGFVSFRNQQDAQSAINDLTGK 195
L+ F + C+D +++ + ++ SR F V FR+ ++A+ L G+
Sbjct: 208 LWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGR 267
Query: 196 WLGSRQIRCNWAS 208
+ +I+ +++
Sbjct: 268 LFNNPRIKIMYSN 280
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 30/284 (10%)
Query: 39 GFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAF 98
GF S+ +++VG++ P+ T+S L ELF G ++ ++ + F+ Y A
Sbjct: 14 GFQSN---NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVA 68
Query: 99 AIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
A L G NL G IK+ YAR + S ++VG + P V+ L FS +
Sbjct: 69 AKEALQGANLNGSQIKIE--YARPAKPCKS----LWVGGIGPNVSKDDLEEEFSKFGKIE 122
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQ 218
D R + R R F+ + DA A + GK +G +R ++ A ++
Sbjct: 123 DFRFL------RERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWA 175
Query: 219 SS-DSK--NVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS-- 273
S D++ N+ ++ D P K +++G P T + Q H+
Sbjct: 176 GSYDNRNGNMNHKPQYPHSYEDFKGDVQPSK-----VLWIG-FPPTATQCNDEQILHNAM 229
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKP 317
+ G IE V+ + F V + + AE A + G LF P
Sbjct: 230 ILFGEIERVKSYPSRNFALVEFRS-AEEARQCKEGLQGRLFNNP 272
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 35/193 (18%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLN 104
C+S++VG I P V+ L+E F+ G +E + +R+ K++ F+DYY+ A A ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDDALQA-KSMN 150
Query: 105 GRNLFGQ-----------PIKVNWAYARSQREDTSGH-------FNIFVGDLSPEVTDAT 146
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPS---KV 207
Query: 147 LYACFSAYPS-CSDARVMWDQ----------QTGRSRGFGFVSFRNQQDAQSAINDLTGK 195
L+ F + C+D +++ + ++ SR F V FR+ ++A+ L G+
Sbjct: 208 LWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGR 267
Query: 196 WLGSRQIRCNWAS 208
+ +I+ +++
Sbjct: 268 LFNNPRIKIMYSN 280
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 30/284 (10%)
Query: 39 GFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAF 98
GF S+ +++VG++ P+ T+S L ELF G ++ ++ + F+ Y A
Sbjct: 14 GFQSN---NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVA 68
Query: 99 AIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
A L G NL G IK+ YAR + S ++VG + P V+ L FS +
Sbjct: 69 AKEALQGANLNGSQIKIE--YARPAKPCKS----LWVGGIGPNVSKDDLEEEFSKFGKIE 122
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQ 218
D R + R R F+ + DA A + GK +G +R ++ A ++
Sbjct: 123 DFRFL------RERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWA 175
Query: 219 SS-DSK--NVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS-- 273
S D++ N+ ++ D P K +++G P T + Q H+
Sbjct: 176 GSYDNRNGNMNHKPQYPHSYEDFKGDVQPSK-----VLWIG-FPPTATQCNDEQILHNAM 229
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKP 317
+ G IE V+ + F V + + AE A + G LF P
Sbjct: 230 ILFGEIERVKSYPSRNFALVEFRS-AEEARQCKEGLQGRLFNNP 272
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 35/193 (18%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLN 104
C+S++VG I P V+ L+E F+ G +E + +R+ K++ F+DYY+ A A ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDDALQA-KSMN 150
Query: 105 GRNLFGQ-----------PIKVNWAYARSQREDTSGH-------FNIFVGDLSPEVTDAT 146
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPS---KV 207
Query: 147 LYACFSAYPS-CSDARVMWDQ----------QTGRSRGFGFVSFRNQQDAQSAINDLTGK 195
L+ F + C+D +++ + ++ SR F V FR+ ++A+ L G+
Sbjct: 208 LWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGR 267
Query: 196 WLGSRQIRCNWAS 208
+ +I+ +++
Sbjct: 268 LFNNPRIKIMYSN 280
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 30/284 (10%)
Query: 39 GFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAF 98
GF S+ +++VG++ P+ T+S L ELF G ++ ++ + F+ Y A
Sbjct: 14 GFQSN---NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVA 68
Query: 99 AIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
A L G NL G IK+ YAR + S ++VG + P V+ L FS +
Sbjct: 69 AKEALQGANLNGSQIKIE--YARPAKPCKS----LWVGGIGPNVSKDDLEEEFSKFGKIE 122
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQ 218
D R + R R F+ + DA A + GK +G +R ++ A ++
Sbjct: 123 DFRFL------RERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWA 175
Query: 219 SS-DSK--NVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS-- 273
S D++ N+ ++ D P K +++G P T + Q H+
Sbjct: 176 GSYDNRNGNMNHKPQYPHSYEDFKGDVQPSK-----VLWIG-FPPTATQCNDEQILHNAM 229
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKP 317
+ G IE V+ + F V + + AE A + G LF P
Sbjct: 230 ILFGEIERVKSYPSRNFALVEFRS-AEEARQCKEGLQGRLFNNP 272
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
IFVG LS +VT+ L + F Y ++ ++M + TGR RGFGF++F +++ A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQ 218
G+ LG++ I N A D Q
Sbjct: 74 HGRELGNKVISVNKAEPKVGGEDVDQ 99
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
IFVG LS +VT+ L + F Y ++ ++M + TGR RGFGF++F +++ A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQ 218
G+ LG++ I N A D Q
Sbjct: 74 HGRELGNKVISVNKAEPKVGGEDVDQ 99
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 27/175 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VG I + + L+E F G + ++R + + +GFV + D S V
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPS--VLDRVLQ 65
Query: 104 NGRNLFGQPIKVNWAYARSQREDT--SGHFN---------------IFVGDLSPEVTDAT 146
++ + + V A +R +++ + +G+ N IFVG L P +TD
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 147 LYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F Y +D +M+DQ T R RGFGFVSF ++ S + +DL+GK +
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG +S E + L F+ Y S A VM D+ TGR RGFGFV F + + +
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ +R++ K A + +E+Q S G +G+ + + +
Sbjct: 68 --HSIDTREVDV----KRAMSREEQQVS----------GRTGNLNTSRSSGGDAYNKTKK 111
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGT----IEDVRVQRDKGFGFVRYSTH 298
++VG L P +T + Q+F G T + D R +GFGFV + +
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE 161
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+++G LSP + +L FS++ ++ARVM ++ TGRSRG+GFV+F ++ A SAI+ +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 193 TGKWLGSRQIRCNWA 207
G+ L I N A
Sbjct: 93 NGQELNGFNISVNVA 107
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
R+V+ + + T+ + E F+ AG + +LI S G++++YD S AI
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 102 TLNGRNLFGQPIKV-------NWAYARSQREDTSGHFN--IFVGDLSPEVTDATLYACFS 152
L+G+ GQP+ V N A + S +G + ++VG+L +++ L F
Sbjct: 228 -LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFE 286
Query: 153 AYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNWAS 208
A+ ++ D +TG+ +GFGF+ F + +++A L GK + R I+ + S
Sbjct: 287 AFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVS 343
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 34/197 (17%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F + + T+ +Y FS D R++ D+ + RS+G G++ F + AI L
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 228
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+G+ + + K S KN+ + + T G P
Sbjct: 229 SGQLFLGQPVMV------------KPSEAEKNLAQSNSTTVGGT----------GPADRK 266
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD------KGFGFVRYS--THAEAALA 304
+YVGNL ++ + L Q F + G +E V++ D KGFGF+++ H++AA
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGP--VELVQLPLDPETGQCKGFGFIQFVQLEHSKAA-Q 323
Query: 305 IQMGNARVLFGKPIKCS 321
I + + G+ IK S
Sbjct: 324 IALNGKLEIAGRTIKVS 340
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 191 DLTGKWLGSRQIRCNWA 207
++ GK L R I N A
Sbjct: 66 EMNGKELDGRVITVNEA 82
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 29/195 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI--- 189
+F+G +S + + L FS++ +A ++ D+ TGR+RGFGFV F + A+ I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
+++ G+ + +++ D +N+V +N +S +P +
Sbjct: 68 HNIDGRLVEAKK---------------AVPRDDQNMVNRSNSSS------IQGSPGGPGR 106
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGAGT----IEDVRVQRDKGFGFVRYSTHAEAALAI 305
++VG L VT D +F G T + D QR +GFGF+ Y + EA +
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE-EAVEKV 165
Query: 306 QMGNARVLFGKPIKC 320
+ L GK ++
Sbjct: 166 LLKTFHELNGKMVEV 180
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I + L+E F+ G + +++ + +GFV + D + A IV
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE--IVIT 65
Query: 104 NGRNLFGQPIKVNWAYARS-----QREDTSG----------HFNIFVGDLSPEVTDATLY 148
N+ G+ ++ A R R ++S IFVG L VT++
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 149 ACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F + + +D VM+D T R RGFGF+++ +++ + + ++L GK +
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 178
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 29/195 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI--- 189
+F+G +S + + L FS++ +A ++ D+ TGR+RGFGFV F + A+ I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
+++ G+ + +++ D +N+V +N +S +P +
Sbjct: 68 HNIDGRLVEAKK---------------AVPRDDQNMVNRSNSSS------IQGSPGGPGR 106
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGAGT----IEDVRVQRDKGFGFVRYSTHAEAALAI 305
++VG L VT D +F G T + D QR +GFGF+ Y + EA +
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE-EAVEKV 165
Query: 306 QMGNARVLFGKPIKC 320
+ L GK ++
Sbjct: 166 LLKTFHELNGKMVEV 180
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I + L+E F+ G + +++ + +GFV + D + A IV
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE--IVIT 65
Query: 104 NGRNLFGQPIKVNWAYARS-----QREDTSG----------HFNIFVGDLSPEVTDATLY 148
N+ G+ ++ A R R ++S IFVG L VT++
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 149 ACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F + + +D VM+D T R RGFGF+++ +++ + + ++L GK +
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 178
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 190 NDLTGKWLGSRQIRCNWA 207
++ GK L R I N A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 191 DLTGKWLGSRQIRCNWA-SKGA 211
++ GK L R I N A S+G+
Sbjct: 66 EMNGKELDGRVITVNEAQSRGS 87
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L F Y +A +M D+ TGR+RGFGF+ F + A+ I D
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A + K+ + +++ ++G +G T
Sbjct: 77 --HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART-----------KK 123
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTHAEAALAIQ 306
++VG L +T + +F GTI DV V QR +GFGF+ + + + +
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQF--GTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 42 SSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAA 97
+S +++G I + LQE F G L ++R + +GF+ + D S A
Sbjct: 11 ASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70
Query: 98 FAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFN--------------------IFVGD 137
I ++ + G+ ++ A R ++ H + IFVG
Sbjct: 71 RVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGG 128
Query: 138 LSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLT 193
L +T+A F + + +D VM+D T R RGFGF++F +++ + ++L
Sbjct: 129 LPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 188
Query: 194 GKWL 197
GK +
Sbjct: 189 GKMV 192
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L F Y +A +M D+ TGR+RGFGF+ F + A+ I D
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A + K+ + +++ ++G +G T
Sbjct: 74 --HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART-----------KK 120
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTHAEAALAIQ 306
++VG L +T + +F GTI DV V QR +GFGF+ + + + +
Sbjct: 121 IFVGGLPSSITEAEFKNYFDQF--GTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 178
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 42 SSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAA 97
+S +++G I + LQE F G L ++R + +GF+ + D S A
Sbjct: 8 ASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 67
Query: 98 FAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFN--------------------IFVGD 137
I ++ + G+ ++ A R ++ H + IFVG
Sbjct: 68 RVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGG 125
Query: 138 LSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLT 193
L +T+A F + + +D VM+D T R RGFGF++F +++ + ++L
Sbjct: 126 LPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 185
Query: 194 GKWL 197
GK +
Sbjct: 186 GKMV 189
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ FVG L+ D L F+ Y D++++ D++TGRSRGFGFV+F++++ + AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 190 NDLTGKWLGSRQIRCN 205
+ G+ L R I N
Sbjct: 67 EGMNGQDLDGRSITVN 82
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ FVG L+ D L F+ Y D++++ D++TGRSRGFGFV+F++++ + AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 190 NDLTGKWLGSRQIRCN 205
+ G+ L R I N
Sbjct: 67 EGMNGQDLDGRSITVN 82
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 111 QPIK-VNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTG 169
QP+ + Y S DT+ +FVG L+ E TL F Y +A V+ D+ TG
Sbjct: 4 QPVPGSGFHYLNSPFGDTT-FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTG 62
Query: 170 RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKG 210
RS+G+GFV+FR+ + A+ A D T + R+ CN AS G
Sbjct: 63 RSKGYGFVTFRDPEAARRACADPT-PIIDGRRANCNLASLG 102
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS---YGFVDYYDRSSAA 97
+S+ R ++V N+ ++ + + ELF G + ++IR++ + FV A
Sbjct: 90 NSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQ 149
Query: 98 FAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFN-------------IFVGDLSPEVTD 144
AI + + G+ I V ++AR ++ T N ++V +L+ +
Sbjct: 150 AAIDKFDTFQVSGRIISV--SFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARS 207
Query: 145 ATLYACFSAYP-SCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 203
L F+A + ARV++ GRS G+GFVSF +++A++AI L GK + R I
Sbjct: 208 THLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPIT 267
Query: 204 CNWASKGANANDEKQSSDSKNVVE 227
++ + A+ +++ S ++ N E
Sbjct: 268 LKFSLRSASESEDGDSVEANNASE 291
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 166 QQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNV 225
Q+ G++RGF FV+ + ++AQ+AI+ + R I ++A + +K + S N
Sbjct: 129 QKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRF-----KKPTPKSPN- 182
Query: 226 VELTNGTSGSQEITNDDAPEKNPQYT--TVYVGNLAPEVTSVDLHQ-----HFHSLGAGT 278
D P P T +YV NLA + S L + F+ + A
Sbjct: 183 ----------------DLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARV 226
Query: 279 IEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSW 322
+ R G+GFV ++T EA AI N + + G+PI +
Sbjct: 227 VFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKF 270
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 36/182 (19%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
IF+G L + T+ F Y +D+ +M D+ TG+ RGFGF++F + I D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 193 TGKWLGSRQIRCNWA-SKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYT 251
+ +Q+ KGA N QS D K
Sbjct: 81 --HVINGKQVEIKRTIPKGAGGN---QSKDIKT--------------------------K 109
Query: 252 TVYVGNLAPEVTSVDLHQHFHSLGA----GTIEDVRVQRDKGFGFVRYSTHAEAALAIQM 307
++VG + VT +L F G I D R +GFGFV + + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 308 GN 309
GN
Sbjct: 170 GN 171
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 119 YARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVS 178
+ RS D S +++ V +++ T LY F+ Y D + D++TG SRGF FV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 179 FRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAN 214
++ + +A A+ L G+ + R+I +A G NA
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAE 99
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 119 YARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVS 178
+ RS D S +++ V +++ T LY F+ Y D + D++TG SRGF FV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 179 FRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAN 214
++ + +A A+ L G+ + R+I +A G NA
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAE 99
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+FVG L+ E TL F Y +A V+ D+ TGRS+G+GFV+FR+ + A+ A D
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 192 LTGKWLGSRQIRCNWASKG 210
T + R+ CN AS G
Sbjct: 85 PT-PIIDGRRANCNLASLG 102
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+FVG L+ E TL F Y +A V+ D+ TGRS+G+GFV+FR+ + A+ A D
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 192 LTGKWLGSRQIRCNWASKG 210
T + R+ CN AS G
Sbjct: 85 PT-PIIDGRRANCNLASLG 102
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 32/192 (16%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEG--CKL-----------IRKEKSSYGFVDYYD 92
R+V+ I + T+ + E F+ AG + C+ I + G+V++YD
Sbjct: 211 RTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEFYD 270
Query: 93 RSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTS---------------GHFNIFVGD 137
S AI L+G+ L GQP+ V + A ++ G ++VG+
Sbjct: 271 TMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGN 329
Query: 138 LSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW- 196
L +++ L F ++ S +V D+ TG +GFGFV F +DA++A+N L G+
Sbjct: 330 LHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALN-LNGQLE 387
Query: 197 LGSRQIRCNWAS 208
+ R I+ + +
Sbjct: 388 IAGRAIKVSAVT 399
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 41/207 (19%)
Query: 133 IFVGDLSPEVTDATLYACFS-AYPSC--------SDARVMWDQQTGRSRGFGFVSFRNQQ 183
+F ++ T+ +Y FS A C D R++ D+ + RSRG G+V F +
Sbjct: 213 VFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEFYDTM 272
Query: 184 DAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDA 243
AI L+G+ L + + K S KN+V+ T +G+ +
Sbjct: 273 SVPMAIA-LSGQPLLGQPVMV------------KPSEAEKNLVQSTTAAAGAGGMLG--- 316
Query: 244 PEKNPQYT----TVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVR 294
Y+ +YVGNL ++ DL + F S G ++E V+V RD KGFGFV+
Sbjct: 317 -----PYSGGARRLYVGNLHINMSEDDLRKVFESFG--SVELVQVPRDETGLCKGFGFVQ 369
Query: 295 YSTHAEAALAIQMGNARVLFGKPIKCS 321
++ +A A+ + + G+ IK S
Sbjct: 370 FARLEDARNALNLNGQLEIAGRAIKVS 396
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
IFVG L P + + L F Y + ++M+D TGRSRGFGFV+F+ + +D
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 193 TGKWLGSRQIRCNWA 207
LG +Q+ A
Sbjct: 219 KVHELGDKQVEIKRA 233
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +GSR C ASKG + G + + A N +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGP----------------VFGGAPIAAAAVSAPAQHSNSE 241
Query: 250 YT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGFVRYSTHAEA 301
+T +YV N+ E+ L F G IE D R KGF Y + A
Sbjct: 242 HTQKKIYVSNVGAELDPQKLLMFFSKF--GEIEEGPLGLDKYTGRPKGFCLFVYKSSESA 299
Query: 302 ALAIQ 306
A++
Sbjct: 300 KRALE 304
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +GSR C ASKG + G + + A N +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGP----------------VFGGAPIAAAAVSAPAQHSNSE 241
Query: 250 YT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGFVRYSTHAEA 301
+T +YV N+ E+ L F G IE D R KGF Y + A
Sbjct: 242 HTQKKIYVSNVGAELDPQKLLMFFSKF--GEIEEGPLGLDKYTGRPKGFCLFVYKSSESA 299
Query: 302 ALAIQ 306
A++
Sbjct: 300 KRALE 304
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +GSR C ASKG + G + + A N +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGP----------------VFGGAPIAAAAVSAPAQHSNSE 241
Query: 250 YT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGFVRYSTHAEA 301
+T +YV N+ E+ L F G IE D R KGF Y + A
Sbjct: 242 HTQKKIYVSNVGAELDPQKLLMFFSKF--GEIEEGPLGLDKYTGRPKGFCLFVYKSSESA 299
Query: 302 ALAIQ 306
A++
Sbjct: 300 KRALE 304
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +GSR C ASKG + G + + A N +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGP----------------VFGGAPIAAAAVSAPAQHSNSE 241
Query: 250 YT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGFVRYSTHAEA 301
+T +YV N+ E+ L F G IE D R KGF Y + A
Sbjct: 242 HTQKKIYVSNVGAELDPQKLLMFFSKF--GEIEEGPLGLDKYTGRPKGFCLFVYKSSESA 299
Query: 302 ALAIQ 306
A++
Sbjct: 300 KRALE 304
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +GSR C ASKG + G + + A N +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGP----------------VFGGAPIAAAAVSAPAQHSNSE 241
Query: 250 YT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGFVRYSTHAEA 301
+T +YV N+ E+ L F G IE D R KGF Y + A
Sbjct: 242 HTQKKIYVSNVGAELDPQKLLMFFSKF--GEIEEGPLGLDKYTGRPKGFCLFVYKSSESA 299
Query: 302 ALAIQ 306
A++
Sbjct: 300 KRALE 304
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
++ V +LS + + L F + + + V DQ+TG SRGFGFV+F +++DAQ AIN
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 192 LTGKWLGSRQIRCNWAS 208
L G + +R WA+
Sbjct: 274 LNGYGYDNLILRVEWAT 290
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
++ V +LS + + L F + + + V DQ+TG SRGFGFV+F +++DAQ AIN
Sbjct: 241 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 300
Query: 192 LTGKWLGSRQIRCNWAS 208
L G + +R WA+
Sbjct: 301 LNGYGYDNLILRVEWAT 317
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 40/184 (21%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND- 191
IF+G L + T+ F Y +D+ +M D+ TG+ RGFGF++F + I D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 192 --LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
+ GK + ++ KGA N QS D K
Sbjct: 81 HVINGKQVEIKRT----IPKGAGGN---QSKDIKT------------------------- 108
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGA----GTIEDVRVQRDKGFGFVRYSTHAEAALAI 305
++VG + VT +L F G I D R +GFGFV + + +
Sbjct: 109 -KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 306 QMGN 309
GN
Sbjct: 168 SKGN 171
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L E T TL F Y + V+ D+ TG+++GFGFV F+ ++ A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGT 232
+ + L +R C AS G A+ + D V+++ G+
Sbjct: 163 KEPKKRIL-NRTATCQLASMGPAASGKGH--DQPGPVKISMGS 202
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FV LS TD +L FS + +AR++ D +T R +GFGF++F ++ DA+ A+ L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 193 TGKWLGSRQI 202
GK + R I
Sbjct: 69 DGKIVDGRLI 78
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L E T TL F Y + V+ D+ TG+++GFGFV F+ ++ A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGT 232
+ + L +R C AS G A+ + D V+++ G+
Sbjct: 163 KEPKKRIL-NRTATCQLASMGPAASGKGH--DQPGPVKISMGS 202
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 107 NLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQ 166
N+F QP + + A Q + IFVG LSP L F ++ DA V+ D+
Sbjct: 12 NIFRQPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDR 71
Query: 167 QTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
++G SRGFGFV++ + + A +A+ + K L R I + A
Sbjct: 72 ESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 116 NWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFG 175
N +Y RS DT+ H +FVG L+ E + F + +A ++ D+ TG+S+G+G
Sbjct: 3 NTSYYRSPFGDTT-HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61
Query: 176 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKG 210
FV+FR+ A A+ D + R+ CN AS G
Sbjct: 62 FVTFRDSDSATRAVAD-PNPVIDGRKANCNIASFG 95
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG L+ EV ++ L+A F + D + DQ + R FGFV+F ++DA +A++++
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 193 TGKWLGSRQIRCNWA 207
G L R + N+A
Sbjct: 75 DGAELYGRVLTVNYA 89
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE LENGTH=946
Length = 946
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMW---DQQTGRSRGFGFVSFRNQQDAQSA 188
N++VG+LSP+V + L F + + ++MW D++ R R GFVSF N+ D Q+A
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAA 239
Query: 189 INDLTGKWLGSRQIRCNW 206
+++ G + +++ W
Sbjct: 240 KDEMQGIIVYEYELKIGW 257
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYG----FVDYYDRSSA 96
D S+ ++VG++ T+ ++ F G + LI+ +++ FV Y A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 97 AFAIVTL-NGRNLFGQ--PIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSA 153
AI L N L G P++V +A +R T F +FVG L+ + T+ + F
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTL-EFKLFVGSLNKQATEKEVEEIFLQ 233
Query: 154 YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW 196
+ D +M D+ +SRG GFV + +++ A +AI+ L G +
Sbjct: 234 FGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
N+F+ ++ E D L A F ++ A+V D+ TG S+ FGFVS+ +Q AQ+AI+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 192 LTGKWLGSRQIRCNWASKGANANDEKQSS 220
+ G+ LG ++++ N S
Sbjct: 410 MNGRHLGGKKLKVQLKRDSNNGQPSSNPS 438
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VG + + T + + F G + +++ K+ +GFV Y D S+ V
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD--SSVVDKVIQ 101
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGHFN---IFVGDLSPEVTDATLYACFSAYPSCSDA 160
+ + G+ +++ R +S F IFVG + V D F + +
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSM--SSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 161 RVMWDQQTGRSRGFGFVSFRNQ 182
++M D TGRSRGFGFV++ ++
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESE 181
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYG----FVDYYDRSSA 96
D S+ ++VG++ T+ ++ F G + LI+ +++ FV Y A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 97 AFAIVTL-NGRNLFGQPIKVNWAYARSQREDTSG-HFNIFVGDLSPEVTDATLYACFSAY 154
AI L N L G V YA +RE F +FVG L+ + T+ + F +
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 234
Query: 155 PSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW 196
D +M D+ +SRG GFV + +++ A +AI+ L G +
Sbjct: 235 GHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYG----FVDYYDRSSA 96
D S+ ++VG++ T+ ++ F G + LI+ +++ FV Y A
Sbjct: 40 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 99
Query: 97 AFAIVTL-NGRNLFGQPIKVNWAYARSQREDTSG-HFNIFVGDLSPEVTDATLYACFSAY 154
AI L N L G V YA +RE F +FVG L+ + T+ + F +
Sbjct: 100 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 159
Query: 155 PSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW 196
D +M D+ +SRG GFV + +++ A +AI+ L G +
Sbjct: 160 GHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 200
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 193 TGKWLGSRQIRCNWASKG 210
T + R+ CN AS G
Sbjct: 75 T-PVIDGRRANCNLASLG 91
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F + ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A K +D++ + + L + G T
Sbjct: 68 --HIIDGRTVE---AKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT-----------KK 111
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYST 297
++VG L +T + +F GTI DV V QR +GFGF+ + +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQF--GTIADVVVMYDHNTQRPRGFGFITFDS 160
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F + ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A K +D++ + + L + G T
Sbjct: 68 --HIIDGRTVE---AKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT-----------KK 111
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYST 297
++VG L +T + +F GTI DV V QR +GFGF+ + +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQF--GTIADVVVMYDHNTQRPRGFGFITFDS 160
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 193 TGKWLGSRQIRCNWASKG 210
T + R+ CN AS G
Sbjct: 75 T-PVIDGRRANCNLASLG 91
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++V ++ A L F + + V + QTG SRG G+V+ + A+ AI L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
G +G R++R ++ V++ GT + E+ N P+K Y +
Sbjct: 170 DGTEVGGREMRVRYS------------------VDMNPGTRRNPEVLN-STPKKILMYES 210
Query: 253 ---VYVGNLAPEVTSVD-LHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAEAALA 304
VYVGNL P T D L HF G + D + R++ F F+ +++ E A
Sbjct: 211 QHKVYVGNL-PWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAA 269
Query: 305 I 305
+
Sbjct: 270 L 270
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F + ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A K +D++ + + L + G T
Sbjct: 68 --HIIDGRTVE---AKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT-----------KK 111
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYST 297
++VG L +T + +F GTI DV V QR +GFGF+ + +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQF--GTIADVVVMYDHNTQRPRGFGFITFDS 160
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F + ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A K +D++ + + L + G T
Sbjct: 68 --HIIDGRTVE---AKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT-----------KK 111
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYST 297
++VG L +T + +F GTI DV V QR +GFGF+ + +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQF--GTIADVVVMYDHNTQRPRGFGFITFDS 160
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
++ V +LS + L F + + + V DQ+T SRGFGFVSF +++DAQ AIN
Sbjct: 207 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 266
Query: 192 LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTN 230
L G + +R W++ D +D N+ +L N
Sbjct: 267 LNGYGYDNLILRVEWSTPKTQL-DPFSFADYNNLCKLLN 304
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 192 LTGKWLGSRQIRCNWASKG 210
T + R+ CN AS G
Sbjct: 74 AT-PVIDGRRANCNLASLG 91
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
N+F+ ++ E D L A F + A+V D+ TG S+ FGF+S+ +Q AQ+AIN
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 192 LTGKWLGSRQIRC 204
+ G L ++++
Sbjct: 391 MNGCQLSGKKLKV 403
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
N+F+ ++ E D L A F + A+V D+ TG S+ FGF+S+ +Q AQ+AIN
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 192 LTGKWLGSRQIR 203
+ G L ++++
Sbjct: 400 MNGCQLSGKKLK 411
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG L ++T+ + FS Y S +++ D+ R + +GFV+F N++ A AI D+
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDM 67
Query: 193 TGKWLGSRQIRCN-WASKGANAN 214
GK +G R +R N ++G N
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGRMN 90
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 138 LSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 197
LS TD +L F+ + AR++ DQQT R +GFGF++F ++ DAQ A+ L GK +
Sbjct: 78 LSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 198 GSRQI 202
R I
Sbjct: 133 NGRLI 137
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 28/177 (15%)
Query: 44 TCRSVYVGNIHPQVTDSLLQELFAGAG-ALEGCKLIRKEKSS-----YGFVDYYDRSSAA 97
+C+ +++G I + ++ L++ F G LE +I K++++ +GFV + D + A
Sbjct: 5 SCK-LFIGGISWETSEDRLRDYFHSFGEVLE--AVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 98 FAIVTLNGRNLFGQPIKVNWAYAR----------SQREDTSGHFN---IFVGDLSPEVTD 144
V L + G+ ++ A R S + + G N IFVG L+ VT+
Sbjct: 62 --RVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTE 119
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA----QSAINDLTGKWL 197
A F+ + +D VM+D +T R RGFGF+S+ +++ Q ++L GK +
Sbjct: 120 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 28/177 (15%)
Query: 44 TCRSVYVGNIHPQVTDSLLQELFAGAG-ALEGCKLIRKEKSS-----YGFVDYYDRSSAA 97
+C+ +++G I + ++ L++ F G LE +I K++++ +GFV + D + A
Sbjct: 5 SCK-LFIGGISWETSEDRLRDYFHSFGEVLE--AVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 98 FAIVTLNGRNLFGQPIKVNWAYAR----------SQREDTSGHFN---IFVGDLSPEVTD 144
V L + G+ ++ A R S + + G N IFVG L+ VT+
Sbjct: 62 --RVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTE 119
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA----QSAINDLTGKWL 197
A F+ + +D VM+D +T R RGFGF+S+ +++ Q ++L GK +
Sbjct: 120 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 128 SGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQS 187
S NIFV L + T L A F Y ++ V+ D+ TGR++GFGFV F+ ++ A++
Sbjct: 160 SSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARA 219
Query: 188 AINDLTGKWLGSRQIRC 204
A+ + K + +R + C
Sbjct: 220 ALKN-PEKRMYNRTVSC 235
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 120 ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSF 179
AR Q E ++ N+FV LS T L F+ + +DA+V+ D+ +G S+GFGFV +
Sbjct: 48 ARPQAEPST---NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
Query: 180 RNQQDAQSAINDLTGKWLGSRQIRCNWA 207
+D+ I + GK+L I +A
Sbjct: 105 ATLEDSAKGIAGMDGKFLDGWVIFAEYA 132
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 40/62 (64%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 191 DL 192
++
Sbjct: 66 EM 67
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLN 104
R ++V N+ + D L LF G + K + + V YYD +A A L+
Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRG-FIMVSYYDIRAAQKAARALH 268
Query: 105 GRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMW 164
GR L G+ + + ++ + ++ S ++V +L +++ L+ FS+Y + R
Sbjct: 269 GRLLRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR--- 325
Query: 165 DQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
+T ++ F + + A+ A+ L G + RQ++
Sbjct: 326 --RTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+F+G LS T+ L FS +A+++ D+ + RS+GFGFV+F + +AQ A+ +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 192 LTGKWLGSRQIRCNWA 207
G+ L R I ++A
Sbjct: 95 FNGQQLNGRTIFVDYA 110
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FV LS T+ L F+++ DARV+ D+ +GRS+GFGFV++ +DA+ A ++
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 193 TGKWL 197
K+L
Sbjct: 96 NAKFL 100
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
IFVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+F+ + A A ++
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 193 TGKWLGSRQIRCNWASKGA 211
+ R+ CN A GA
Sbjct: 84 N-PVIDGRRANCNLACLGA 101
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 162 VMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSD 221
V + QTG SRG G+V+ + A+ AI L G +G R++R ++
Sbjct: 140 VSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYS-------------- 185
Query: 222 SKNVVELTNGTSGSQEITNDDAPEKNPQYTT---VYVGNLAPEVTSVD-LHQHFHSLG-- 275
V++ GT + E+ N P+K Y + VYVGNL P T D L HF G
Sbjct: 186 ----VDMNPGTRRNPEVLN-STPKKILMYESQHKVYVGNL-PWFTQPDGLRNHFSKFGTI 239
Query: 276 --AGTIEDVRVQRDKGFGFVRYSTHAEAALAI 305
+ D + R++ F F+ +++ E A+
Sbjct: 240 VSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 271
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 118 AYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFV 177
+Y RS DT+ + +FVG L+ E + F + +A ++ D+ TG+S+G+GFV
Sbjct: 5 SYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
Query: 178 SFRNQQDAQSAINDLTGKWLGSRQIRCNWAS 208
+FR A A+ D + R+ CN AS
Sbjct: 64 TFRESDSATRAVAD-PNPVIDGRKANCNIAS 93
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA----QSA 188
IFVG L+ VT+A F+ + +D VM+D +T R RGFGF+S+ +++ Q
Sbjct: 48 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 107
Query: 189 INDLTGKWL 197
++L GK +
Sbjct: 108 FHELNGKMV 116
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 118 AYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFV 177
+Y RS DT+ + +FVG L+ E + F + +A ++ D+ TG+S+G+GFV
Sbjct: 5 SYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
Query: 178 SFRNQQDAQSAINDLTGKWLGSRQIRCNWAS 208
+FR A A+ D + R+ CN AS
Sbjct: 64 TFRESDSATRAVAD-PNPVIDGRKANCNIAS 93
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
NIFV + T L F +Y + V+ D+ TGR +G+GFV F+ ++ A+ A+
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK- 467
Query: 192 LTGKWLGSRQIRCNWAS-KGANANDEKQSSDSKNVVELTNGTSGSQEI 238
K + +R + CN AS K A E+ ++ N ++LT + S+ +
Sbjct: 468 RPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVN-IDLTKMANQSEAV 514
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 134 FVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLT 193
FV S V++ L FS + ++ +++ +++T +S G+G+V F +++DAQSA+ +
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 194 GKWLGSRQIRCNWASKG 210
GK+ R I + G
Sbjct: 140 GKFFDGRFILVKFGQPG 156