Miyakogusa Predicted Gene
- Lj0g3v0282449.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0282449.1 Non Chatacterized Hit- tr|I3T570|I3T570_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.54,0,coiled-coil,NULL; helix loop helix
domain,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding,CUFF.18790.1
(274 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 199 1e-51
AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 194 6e-50
AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:63... 191 5e-49
AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 145 3e-35
AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 129 2e-30
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 129 2e-30
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 128 5e-30
AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 123 1e-28
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 123 1e-28
AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 123 1e-28
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 123 2e-28
AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 122 2e-28
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 122 2e-28
AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 122 2e-28
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 118 4e-27
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-hel... 117 8e-27
AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 116 2e-26
AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P | chr1:21... 116 2e-26
AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 116 2e-26
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 116 2e-26
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 115 2e-26
AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:219... 114 7e-26
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 112 2e-25
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 111 4e-25
AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 111 6e-25
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 111 6e-25
AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 110 7e-25
AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 93 2e-19
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 82 6e-16
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 79 4e-15
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 78 6e-15
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 69 3e-12
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 69 3e-12
AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 1e-11
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 66 2e-11
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 6e-11
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr... 65 6e-11
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr... 65 7e-11
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 64 9e-11
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 64 9e-11
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 64 9e-11
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-l... 64 1e-10
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 1e-10
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 1e-10
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 2e-10
AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 2e-10
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 2e-10
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 2e-10
AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 62 3e-10
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 62 3e-10
AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 62 4e-10
AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 5e-10
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 9e-10
AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 1e-09
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 1e-09
AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 1e-09
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 59 4e-09
AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 4e-09
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 58 6e-09
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 57 1e-08
AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 56 2e-08
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 56 2e-08
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 56 2e-08
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 56 2e-08
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 4e-08
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 54 9e-08
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 54 1e-07
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 2e-07
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 2e-07
AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 51 8e-07
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 51 1e-06
AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 51 1e-06
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 50 1e-06
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896... 49 3e-06
>AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=261
Length = 261
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 145/240 (60%), Gaps = 43/240 (17%)
Query: 65 PEFPENLEGTFPGLVHHVSHNAFPVSLPIFPAEDEIIEG-------------------KK 105
P F +L+ F HN FP P E+ +G KK
Sbjct: 35 PPFSSSLDSLFF-------HNQFPDHFPGKSLENNFHQGIFFPSNIQNNEESSSQFDTKK 87
Query: 106 RKMIMDIQETSS--------ANSTPAVSESGS-RIKNNSGR-GKRAKSNVTXXXXXXXXX 155
RK +M+ TS + S+ VS +G+ KNNS R GKR S
Sbjct: 88 RKSLMEAVSTSENSVSDQTLSTSSAQVSINGNISTKNNSSRRGKR--SKNREEEKEREVV 145
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHS+AERVRRGKINE+L+CLQ+IVPGCYKTMGMA MLDEIINYVQSLQ+
Sbjct: 146 HVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQN 205
Query: 216 QVEFLSLKLTAASTYYDFNSETDAIETMQRARASEAKELARYKREEYGGISCFQ-PTWPL 274
QVEFLS+KLTAAS+YYDFNSETDA+E+MQ+A+A EA E+ + + G S F +W L
Sbjct: 206 QVEFLSMKLTAASSYYDFNSETDAVESMQKAKAREAVEMGQGR----DGSSVFHSSSWTL 261
>AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=260
Length = 260
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 144/240 (60%), Gaps = 44/240 (18%)
Query: 65 PEFPENLEGTFPGLVHHVSHNAFPVSLPIFPAEDEIIEG-------------------KK 105
P F +L+ F HN FP P E+ +G KK
Sbjct: 35 PPFSSSLDSLFF-------HNQFPDHFPGKSLENNFHQGIFFPSNIQNNEESSSQFDTKK 87
Query: 106 RKMIMDIQETSS--------ANSTPAVSESGS-RIKNNSGR-GKRAKSNVTXXXXXXXXX 155
RK +M+ TS + S+ VS +G+ KNNS R GKR S
Sbjct: 88 RKSLMEAVSTSENSVSDQTLSTSSAQVSINGNISTKNNSSRRGKR--SKNREEEKEREVV 145
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHS+AERVRRGKINE+L+CLQ+IVPGCYKTMGMA MLDEIINYVQSLQ+
Sbjct: 146 HVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQN 205
Query: 216 QVEFLSLKLTAASTYYDFNSETDAIETMQRARASEAKELARYKREEYGGISCFQ-PTWPL 274
QVEFLS+KLTAAS+YYDFNSETDA+E+MQ A+A EA E+ + + G S F +W L
Sbjct: 206 QVEFLSMKLTAASSYYDFNSETDAVESMQ-AKAREAVEMGQGR----DGSSVFHSSSWTL 260
>AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 |
chr1:6331464-6333576 FORWARD LENGTH=260
Length = 260
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 102/180 (56%), Positives = 125/180 (69%), Gaps = 11/180 (6%)
Query: 100 IIEGKKRKMIMDIQETSSANSTPAVSESGSRIKNNSG----RGKRAKSNVTXXXXXXXXX 155
+ E KKRK ++ T S++ T VS++ + I +G + K
Sbjct: 87 VDETKKRKALL---PTLSSSETSGVSDNTNVIATETGSLRRGKRLKKKKEEEDEKEREVV 143
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAERVRRGKINE+LRCLQ++VPGCYK MGMA MLDEIINYVQSLQ+
Sbjct: 144 HVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQN 203
Query: 216 QVEFLSLKLTAASTYYDFNSETDAIETMQRARASEAKELARYKREEYGGISCFQ-PTWPL 274
QVEFLS+KLTAAS++YDFNSETDA+++MQRA+A E E+ R R+ G F TW L
Sbjct: 204 QVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVEMGRQTRD---GSPVFHLSTWSL 260
>AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:8880515-8882018 REVERSE
LENGTH=223
Length = 223
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRA+RGQATDSHSLAERVRR KINE+L+CLQ++VPGCYK MGMAVMLD II+YV+SLQ+
Sbjct: 103 HVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQN 162
Query: 216 QVEFLSLKLTAASTYYDFNS-ETDAIETMQRARASEAKELARYKREEYG 263
Q+EFLS+KL+AAS YD NS + + + Q A E+ R RE G
Sbjct: 163 QIEFLSMKLSAASACYDLNSLDIEPTDIFQGGNIHSAAEMERILRESVG 211
>AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAERVRR KI+E++R LQN+VPGC K G A+MLDEIINYVQ+LQ
Sbjct: 135 HVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQT 194
Query: 216 QVEFLSLKLTAAS-TYYDFNSETDAI 240
QVEFLS+KLT+ S YDF S+ D +
Sbjct: 195 QVEFLSMKLTSISPVVYDFGSDLDGL 220
>AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAERVRR KI+E++R LQN+VPGC K G A+MLDEIINYVQ+LQ
Sbjct: 135 HVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQT 194
Query: 216 QVEFLSLKLTAAS-TYYDFNSETDAI 240
QVEFLS+KLT+ S YDF S+ D +
Sbjct: 195 QVEFLSMKLTSISPVVYDFGSDLDGL 220
>AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2341188-2343288 REVERSE
LENGTH=456
Length = 456
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 97/153 (63%), Gaps = 8/153 (5%)
Query: 90 SLPIF-PAEDEIIEGKKRKMIMDIQETSSANSTPAVSESGSRIK----NNSGRGKRAKSN 144
S P+F P + G+ + ++T S ++P+ S I+ ++ R K+++ N
Sbjct: 183 SSPVFKPLASHVPAGESSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEEN 242
Query: 145 ---VTXXXXXXXXXHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAV 201
HVRARRGQATDSHSLAERVRR KI+E+++ LQ++VPGC K G A+
Sbjct: 243 GDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKAL 302
Query: 202 MLDEIINYVQSLQHQVEFLSLKLTAASTYYDFN 234
MLDEIINYVQSLQ QVEFLS+KL++ +T DFN
Sbjct: 303 MLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFN 335
>AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 67/81 (82%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQAT+SHSLAERVRR KI+E+++ LQ++VPGC K G AVMLDEIINYVQSLQ
Sbjct: 302 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQR 361
Query: 216 QVEFLSLKLTAASTYYDFNSE 236
QVEFLS+KL + DFN E
Sbjct: 362 QVEFLSMKLATVNPQMDFNLE 382
>AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 67/81 (82%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQAT+SHSLAERVRR KI+E+++ LQ++VPGC K G AVMLDEIINYVQSLQ
Sbjct: 302 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQR 361
Query: 216 QVEFLSLKLTAASTYYDFNSE 236
QVEFLS+KL + DFN E
Sbjct: 362 QVEFLSMKLATVNPQMDFNLE 382
>AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=485
Length = 485
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 67/81 (82%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQAT+SHSLAERVRR KI+E+++ LQ++VPGC K G AVMLDEIINYVQSLQ
Sbjct: 301 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQR 360
Query: 216 QVEFLSLKLTAASTYYDFNSE 236
QVEFLS+KL + DFN E
Sbjct: 361 QVEFLSMKLATVNPQMDFNLE 381
>AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:19684160-19686871 FORWARD
LENGTH=498
Length = 498
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAERVRR KI E+++ LQ++VPGC K G A+MLDEIINYVQSLQ
Sbjct: 300 HVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQR 359
Query: 216 QVEFLSLKLTAAS-TYYDFNSETDAI 240
QVEFLS+KL++ + T DFN DA+
Sbjct: 360 QVEFLSMKLSSVNDTRLDFN--VDAL 383
>AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
H+RARRGQAT+SHSLAERVRR KI+E+++ LQ++VPGC K G AVMLDEIINYVQSLQ
Sbjct: 222 HMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQC 281
Query: 216 QVEFLSLKLTAASTYYDFNSET----DAIET 242
Q+EFLS+KL+A + DFN E+ DA+++
Sbjct: 282 QIEFLSMKLSAVNPVLDFNLESLLAKDALQS 312
>AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
H+RARRGQAT+SHSLAERVRR KI+E+++ LQ++VPGC K G AVMLDEIINYVQSLQ
Sbjct: 222 HMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQC 281
Query: 216 QVEFLSLKLTAASTYYDFNSET----DAIET 242
Q+EFLS+KL+A + DFN E+ DA+++
Sbjct: 282 QIEFLSMKLSAVNPVLDFNLESLLAKDALQS 312
>AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=339
Length = 339
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
H+RARRGQAT+SHSLAERVRR KI+E+++ LQ++VPGC K G AVMLDEIINYVQSLQ
Sbjct: 171 HMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQC 230
Query: 216 QVEFLSLKLTAASTYYDFNSET----DAIET 242
Q+EFLS+KL+A + DFN E+ DA+++
Sbjct: 231 QIEFLSMKLSAVNPVLDFNLESLLAKDALQS 261
>AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528933-8530655 REVERSE
LENGTH=371
Length = 371
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 65/80 (81%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAER RR KI+E++ LQ++VPGC + G AVMLDEIINYVQSLQ
Sbjct: 190 HVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQR 249
Query: 216 QVEFLSLKLTAASTYYDFNS 235
QVEFLS+KL + +FN+
Sbjct: 250 QVEFLSMKLATVNPRMEFNA 269
>AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting
basic-helix-loop-helix 1 | chr4:16498466-16499946
FORWARD LENGTH=335
Length = 335
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 85/138 (61%), Gaps = 3/138 (2%)
Query: 97 EDEIIEGKKRKMIMDIQETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTXXXXXXXXXH 156
+D + EG++ K + Q S S + + +NN S VT H
Sbjct: 115 DDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEENNF---SNDSSKVTKELEKTDYIH 171
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATDSHS+AERVRR KI+E+++ LQ++VPGC K G A MLDEIINYVQSLQ Q
Sbjct: 172 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231
Query: 217 VEFLSLKLTAASTYYDFN 234
+EFLS+KL + DF+
Sbjct: 232 IEFLSMKLAIVNPRPDFD 249
>AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=379
Length = 379
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 65/82 (79%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAER RR KIN +++ LQ +VPGC K G A++LDEIIN+VQSLQ
Sbjct: 203 HVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQR 262
Query: 216 QVEFLSLKLTAASTYYDFNSET 237
QVE LS++L A + DFN +T
Sbjct: 263 QVEMLSMRLAAVNPRIDFNLDT 284
>AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P |
chr1:21909464-21911030 REVERSE LENGTH=264
Length = 264
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 65/74 (87%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAER RR KI+E+++ LQ++VPGC K +G A++LDEIINY+QSLQ
Sbjct: 135 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQR 194
Query: 216 QVEFLSLKLTAAST 229
QVEFLS+KL A ++
Sbjct: 195 QVEFLSMKLEAVNS 208
>AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3304228-3305984 REVERSE
LENGTH=366
Length = 366
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
H+RARRGQAT+SHSLAERVRR KI+E++R LQ +VPGC K G AVMLDEIINYVQSLQ
Sbjct: 205 HMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQ 264
Query: 216 QVEFLSLKLTAASTYYDFNSETDAI 240
QVEFLS+KL A+ + N + D I
Sbjct: 265 QVEFLSMKL--ATVNPEINIDIDRI 287
>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=304
Length = 304
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 61/71 (85%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRG+ATD HSLAER RR KI++K++CLQ+IVPGC K G A MLDEIINYVQSLQ
Sbjct: 140 HVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQ 199
Query: 216 QVEFLSLKLTA 226
QVEFLS+KL+
Sbjct: 200 QVEFLSMKLSV 210
>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=302
Length = 302
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 61/71 (85%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRG+ATD HSLAER RR KI++K++CLQ+IVPGC K G A MLDEIINYVQSLQ
Sbjct: 140 HVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQ 199
Query: 216 QVEFLSLKLTA 226
QVEFLS+KL+
Sbjct: 200 QVEFLSMKLSV 210
>AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P |
chr1:21909635-21911030 REVERSE LENGTH=343
Length = 343
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 65/74 (87%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATDSHSLAER RR KI+E+++ LQ++VPGC K +G A++LDEIINY+QSLQ
Sbjct: 135 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQR 194
Query: 216 QVEFLSLKLTAAST 229
QVEFLS+KL A ++
Sbjct: 195 QVEFLSMKLEAVNS 208
>AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:25133117-25134600 REVERSE
LENGTH=281
Length = 281
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATD HSLAER RR KI+EK+ LQ+I+PGC K +G A++LDEIINY+QSLQ
Sbjct: 152 HVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQR 211
Query: 216 QVEFLSLKL 224
QVEFLS+KL
Sbjct: 212 QVEFLSMKL 220
>AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17624635 FORWARD
LENGTH=327
Length = 327
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 63/79 (79%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATD+HSLAER RR KIN +++ LQ +VPGC K G A++LDEIIN+VQ+LQ
Sbjct: 184 HVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQR 243
Query: 216 QVEFLSLKLTAASTYYDFN 234
QVE LS++L A + DFN
Sbjct: 244 QVEMLSMRLAAVNPRIDFN 262
>AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=337
Length = 337
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 65/89 (73%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATD HSLAER RR KI++K++ LQ+IVPGC K G A MLDEIINYVQ LQ
Sbjct: 184 HVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQR 243
Query: 216 QVEFLSLKLTAASTYYDFNSETDAIETMQ 244
QVEFLS+KL + + E +++ Q
Sbjct: 244 QVEFLSMKLAVLNPELELAVEDVSVKQFQ 272
>AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952546-7954446 REVERSE
LENGTH=364
Length = 364
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 65/89 (73%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATD HSLAER RR KI++K++ LQ+IVPGC K G A MLDEIINYVQ LQ
Sbjct: 184 HVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQR 243
Query: 216 QVEFLSLKLTAASTYYDFNSETDAIETMQ 244
QVEFLS+KL + + E +++ Q
Sbjct: 244 QVEFLSMKLAVLNPELELAVEDVSVKQFQ 272
>AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=335
Length = 335
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 58/69 (84%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
HVRARRGQATD HSLAER RR KI++K++ LQ+IVPGC K G A MLDEIINYVQ LQ
Sbjct: 184 HVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQR 243
Query: 216 QVEFLSLKL 224
QVEFLS+KL
Sbjct: 244 QVEFLSMKL 252
>AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=426
Length = 426
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 65/129 (50%), Gaps = 47/129 (36%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYK-------------------- 195
HVRARRGQATDSHSLAER RR KIN +++ LQ +VPGC K
Sbjct: 203 HVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFGVHLLM 262
Query: 196 ---------------------------TMGMAVMLDEIINYVQSLQHQVEFLSLKLTAAS 228
G A++LDEIIN+VQSLQ QVE LS++L A +
Sbjct: 263 ISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVN 322
Query: 229 TYYDFNSET 237
DFN +T
Sbjct: 323 PRIDFNLDT 331
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 6/112 (5%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A MLDEII+YV+ LQ Q
Sbjct: 130 VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKT-DKASMLDEIIDYVKFLQLQ 188
Query: 217 VEFLSL-KLTAASTYYDFNSETDAIETMQRARASEAK----ELARYKREEYG 263
V+ LS+ +L A++ SE + + EAK ++A+ E+ G
Sbjct: 189 VKVLSMSRLGGAASASSQISEDAGGSHENTSSSGEAKMTEHQVAKLMEEDMG 240
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
+RARRGQATD HS+AER+RR +I E+++ LQ +VP KT A MLDEII+YV+ LQ Q
Sbjct: 138 IRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKT-DKASMLDEIIDYVKFLQLQ 196
Query: 217 VEFLSL-KLTAASTYYDFNSE 236
V+ LS+ +L A++ SE
Sbjct: 197 VKVLSMSRLGGAASVSSQISE 217
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A MLDEII YV+ LQ Q
Sbjct: 99 VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKT-DKASMLDEIIEYVRFLQLQ 157
Query: 217 VEFLSL 222
V+ LS+
Sbjct: 158 VKVLSM 163
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 5/73 (6%)
Query: 159 ARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE 218
++R ++ + H+L+ER RR +INEK+R LQ ++P C K + A MLDE I Y++SLQ QV+
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQ 397
Query: 219 FLSLKLTAASTYY 231
+S+ AS YY
Sbjct: 398 IMSM----ASGYY 406
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 5/73 (6%)
Query: 159 ARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE 218
++R ++ + H+L+ER RR +INEK+R LQ ++P C K + A MLDE I Y++SLQ QV+
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQ 397
Query: 219 FLSLKLTAASTYY 231
+S+ AS YY
Sbjct: 398 IMSM----ASGYY 406
>AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17623469 FORWARD
LENGTH=233
Length = 233
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYK 195
HVRARRGQATD+HSLAER RR KIN +++ LQ +VPGC K
Sbjct: 184 HVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDK 223
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 114 ETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTXXXXXXXXXHVRARRGQATDSHSLAER 173
ET PA + I + R R ++NV ++R +A H L+ER
Sbjct: 231 ETEPVQRQPATE---TDITDERKRKTREETNVENQGTEEARDSTSSKRSRAAIMHKLSER 287
Query: 174 VRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 222
RR KINE ++ LQ ++P C KT + MLD++I YV+SLQ Q++ S+
Sbjct: 288 RRRQKINEMMKALQELLPRCTKT-DRSSMLDDVIEYVKSLQSQIQMFSM 335
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943802-18945613 REVERSE
LENGTH=379
Length = 379
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
+RA+RG AT S+AERVRR KI+E++R LQ++VP A MLD + Y++ LQ Q
Sbjct: 304 IRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQ 363
Query: 217 VEFL 220
V+ L
Sbjct: 364 VKAL 367
>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239566-16241052 REVERSE LENGTH=352
Length = 352
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
RA RG ATD SL R RR +INE+LR LQN+VP K + ++ ML+E ++YV+ LQ Q
Sbjct: 266 TRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTK-VDISTMLEEAVHYVKFLQLQ 324
Query: 217 VEFLS 221
++ LS
Sbjct: 325 IKLLS 329
>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654753-9655806 FORWARD LENGTH=258
Length = 258
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 99 EIIEGKKRKMIMDIQETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTXXXXXXXXXHVR 158
E+ + KK++ + T ++T V G + N+S K + ++V R
Sbjct: 119 ELAKSKKKQRVSSESNTVDESNTNWVD--GQSLSNSSDDEKASVTSVKGK--------TR 168
Query: 159 ARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE 218
A +G ATD SL R RR KINE+L+ LQN+VP K + ++ ML+E ++YV+ LQ Q++
Sbjct: 169 ATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTK-VDISTMLEEAVHYVKFLQLQIK 227
Query: 219 FLS 221
LS
Sbjct: 228 LLS 230
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEF 219
+R +A + H+L+ER RR +INE+++ LQ ++P C K+ A MLDE I Y++SLQ Q++
Sbjct: 210 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMKSLQLQIQM 268
Query: 220 LSL 222
+S+
Sbjct: 269 MSM 271
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEF 219
+R +A + H+L+ER RR +INE+++ LQ ++P C K+ A MLDE I Y++SLQ Q++
Sbjct: 281 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMKSLQLQIQM 339
Query: 220 LSL 222
+S+
Sbjct: 340 MSM 342
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEF 219
+R +A + H+L+ER RR +INE+++ LQ ++P C K+ A MLDE I Y++SLQ Q++
Sbjct: 281 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMKSLQLQIQM 339
Query: 220 LSL 222
+S+
Sbjct: 340 MSM 342
>AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like
1 | chr2:19295617-19297678 REVERSE LENGTH=416
Length = 416
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 156 HVRAR-----RGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYV 210
H R R R ++T+ H L ER RR + N+K+R LQ+++P CYK A +LDE I Y+
Sbjct: 217 HARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKD-DKASLLDEAIKYM 275
Query: 211 QSLQHQVEFLSL 222
++LQ QV+ +S+
Sbjct: 276 RTLQLQVQMMSM 287
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 131 IKNNSGRGKRAKSNVTXXXXXXXXXHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIV 190
I + R R ++NV ++R +A H L+ER RR KINE ++ LQ ++
Sbjct: 245 ITDERKRKTREETNVENQGTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELL 304
Query: 191 PGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKL 224
P C KT + MLD++I YV+SLQ Q++ L++
Sbjct: 305 PRCTKT-DRSSMLDDVIEYVKSLQSQIQGKHLRI 337
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847513-5849500 FORWARD
LENGTH=262
Length = 262
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 156 HVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQH 215
VRA+RG AT S+AERVRR +I++++R LQ +VP K A ML+E + YV+ LQ
Sbjct: 183 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQR 242
Query: 216 QVEFLS 221
Q++ L+
Sbjct: 243 QIQELT 248
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13040092-13041907 FORWARD
LENGTH=259
Length = 259
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRA+RG AT S+AERVRR +I++++R LQ +VP K A ML+E + YV++LQ Q
Sbjct: 181 VRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQ 240
Query: 217 VEFLS 221
++ L+
Sbjct: 241 IQELT 245
>AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=297
Length = 297
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATD HS+AER+RR +I E++R LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 139 VRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 197
Query: 217 VEFLSL 222
V+ LS+
Sbjct: 198 VKVLSM 203
>AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=302
Length = 302
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATD HS+AER+RR +I E++R LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 144 VRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 202
Query: 217 VEFLSL 222
V+ LS+
Sbjct: 203 VKVLSM 208
>AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17611428-17613163 REVERSE
LENGTH=359
Length = 359
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
+RA+RG AT S+AERVRR +I+E++R LQ +VP K + MLD ++Y++ LQ Q
Sbjct: 279 IRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQ 338
Query: 217 VEFLS 221
+ L+
Sbjct: 339 YKILN 343
>AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATD HS+AER+RR +I E++R LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 204
Query: 217 VEFLSL 222
V+ LS+
Sbjct: 205 VKVLSM 210
>AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATD HS+AER+RR +I E++R LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 204
Query: 217 VEFLSL 222
V+ LS+
Sbjct: 205 VKVLSM 210
>AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140117
REVERSE LENGTH=247
Length = 247
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
VRARRGQATD HS+AER+RR +I E++R LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 83 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 141
Query: 217 VEFLSL 222
V+ LS+
Sbjct: 142 VKVLSM 147
>AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=328
Length = 328
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
RA RG ATD SL R RR +INE+LR LQ++VP K + ++ ML+E + YV+ LQ Q
Sbjct: 237 TRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTK-VDISTMLEEAVQYVKFLQLQ 295
Query: 217 VEFLS 221
++ LS
Sbjct: 296 IKLLS 300
>AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=445
Length = 445
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE- 218
+R + + H+LAER RR KINEK++ LQ ++P C K+ ++ LD+ I YV+SLQ Q++
Sbjct: 252 KRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVST-LDDAIEYVKSLQSQIQG 310
Query: 219 FLSLKLTAAST 229
+S + A +T
Sbjct: 311 MMSPMMNAGNT 321
>AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17931680-17935639 REVERSE
LENGTH=309
Length = 309
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
RA+RG AT S+AER RR +I+ KL+ LQ +VP K A MLD + +++ LQHQ
Sbjct: 231 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 290
Query: 217 VEFL 220
VE L
Sbjct: 291 VESL 294
>AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=307
Length = 307
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE- 218
+R +A + H+LAER RR KINE+++ LQ ++P C K+ ++ ML+++I YV+SL+ Q+
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVS-MLEDVIEYVKSLEMQINQ 205
Query: 219 ---FLSLKLTAASTYYDFNSET 237
+++ + Y F S+
Sbjct: 206 FMPHMAMGMNQPPAYIPFPSQA 227
>AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17932376-17935639 REVERSE
LENGTH=297
Length = 297
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
RA+RG AT S+AER RR +I+ KL+ LQ +VP K A MLD + +++ LQHQ
Sbjct: 233 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 292
Query: 217 VE 218
VE
Sbjct: 293 VE 294
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
V +R +A H+ +ER RR KIN++++ LQ +VP KT A MLDE+I Y++ LQ Q
Sbjct: 207 VSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKT-DKASMLDEVIEYLKQLQAQ 265
Query: 217 VEFLS 221
V +S
Sbjct: 266 VSMMS 270
>AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1744843-1747427 FORWARD
LENGTH=362
Length = 362
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
+RA+RG AT S+AER RR +I+ KL+ LQ++VP K + MLD + +++ LQHQ
Sbjct: 283 IRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQ 342
Query: 217 VEFL 220
++ L
Sbjct: 343 LQNL 346
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 163 QATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 222
+A + H+L+E+ RR +INEK++ LQ+++P KT A MLDE I Y++ LQ QV+ L++
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKT-DKASMLDEAIEYLKQLQLQVQMLTM 255
Query: 223 K 223
+
Sbjct: 256 R 256
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 168 HSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 222
H+L+E+ RR KINEK++ LQ ++P KT A MLDE I Y++ LQ QV+ L++
Sbjct: 98 HNLSEKKRRSKINEKMKALQKLIPNSNKT-DKASMLDEAIEYLKQLQLQVQTLAV 151
>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 17/119 (14%)
Query: 104 KKRKMIMDIQETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTXXXXXXXXXHVRARRGQ 163
+KRK +MD + S + S ++ + + N + + RR +
Sbjct: 213 RKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGST----------------RRSR 256
Query: 164 ATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 222
A + H+L+ER RR +INE+++ LQ ++P C +T A +LDE I+Y++SLQ Q++ + +
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQVMWM 314
>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 17/119 (14%)
Query: 104 KKRKMIMDIQETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTXXXXXXXXXHVRARRGQ 163
+KRK +MD + S + S ++ + + N + + RR +
Sbjct: 213 RKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGST----------------RRSR 256
Query: 164 ATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 222
A + H+L+ER RR +INE+++ LQ ++P C +T A +LDE I+Y++SLQ Q++ + +
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQVMWM 314
>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 17/119 (14%)
Query: 104 KKRKMIMDIQETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTXXXXXXXXXHVRARRGQ 163
+KRK +MD + S + S ++ + + N + + RR +
Sbjct: 213 RKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGST----------------RRSR 256
Query: 164 ATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 222
A + H+L+ER RR +INE+++ LQ ++P C +T A +LDE I+Y++SLQ Q++ + +
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQVMWM 314
>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
Length = 442
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 17/119 (14%)
Query: 104 KKRKMIMDIQETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTXXXXXXXXXHVRARRGQ 163
+KRK +MD + S + S ++ + + N + + RR +
Sbjct: 213 RKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGST----------------RRSR 256
Query: 164 ATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 222
A + H+L+ER RR +INE+++ LQ ++P C +T A +LDE I+Y++SLQ Q++ + +
Sbjct: 257 AAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQVMWM 314
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
+A RG A+D SL R RR +IN++L+ LQ++VP K + ++ ML++ ++YV+ LQ Q
Sbjct: 132 AKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTK-VDISTMLEDAVHYVKFLQLQ 190
Query: 217 VEFLS 221
++ LS
Sbjct: 191 IKLLS 195
>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
Length = 430
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEF 219
RR +A + H+L+ER RR +INE+++ LQ ++P C KT A +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQV 312
Query: 220 L 220
+
Sbjct: 313 M 313
>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428
Length = 428
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEF 219
RR +A + H+L+ER RR +INE+++ LQ ++P C KT A +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQV 312
Query: 220 L 220
+
Sbjct: 313 M 313
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 164 ATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFL 220
+TD ++A R RR +I+EK+R LQ +VPG K M A MLDE NY++ L+ QV+ L
Sbjct: 276 STDPQTVAARQRRERISEKIRVLQTLVPGGTK-MDTASMLDEAANYLKFLRAQVKAL 331
>AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=341
Length = 341
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 14/78 (17%)
Query: 157 VRARRGQATDSHSLAERV-------------RRGKINEKLRCLQNIVPGCYKTMGMAVML 203
RA RG ATD SL R+ RR +INE+LR LQ++VP K + ++ ML
Sbjct: 237 TRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHLVPNGTK-VDISTML 295
Query: 204 DEIINYVQSLQHQVEFLS 221
+E + YV+ LQ Q++ LS
Sbjct: 296 EEAVQYVKFLQLQIKLLS 313
>AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990495 REVERSE LENGTH=346
Length = 346
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 160 RRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEF 219
+R + ++++ ER +R IN+K+R LQN++P +K + MLDE INY+ +LQ QV+
Sbjct: 168 KRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNES-MLDEAINYMTNLQLQVQM 226
Query: 220 LSL 222
+++
Sbjct: 227 MTM 229
>AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990546 REVERSE LENGTH=363
Length = 363
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 159 ARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE 218
+R + ++++ ER +R IN+K+R LQN++P +K + MLDE INY+ +LQ QV+
Sbjct: 184 VKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNES-MLDEAINYMTNLQLQVQ 242
Query: 219 FLSL 222
+++
Sbjct: 243 MMTM 246
>AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640031 REVERSE LENGTH=278
Length = 278
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 20/102 (19%)
Query: 127 SGSRIKNNSG-----RGKRAKSNVTXXXXXXXXXHVRARRGQATDSHSLAERVRRGKINE 181
SGS ++ G RG+ +SN RRG+A H+ +ER RR +IN+
Sbjct: 51 SGSETQDTEGDEQETRGEAGRSN--------------GRRGRAAAIHNESERRRRDRINQ 96
Query: 182 KLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLK 223
++R LQ ++P K +++ LD++I +++ LQ QV+F+SL+
Sbjct: 97 RMRTLQKLLPTASKADKVSI-LDDVIEHLKQLQAQVQFMSLR 137
>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640439 REVERSE LENGTH=366
Length = 366
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 20/102 (19%)
Query: 127 SGSRIKNNSG-----RGKRAKSNVTXXXXXXXXXHVRARRGQATDSHSLAERVRRGKINE 181
SGS ++ G RG+ +SN RRG+A H+ +ER RR +IN+
Sbjct: 139 SGSETQDTEGDEQETRGEAGRSN--------------GRRGRAAAIHNESERRRRDRINQ 184
Query: 182 KLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLK 223
++R LQ ++P K +++ LD++I +++ LQ QV+F+SL+
Sbjct: 185 RMRTLQKLLPTASKADKVSI-LDDVIEHLKQLQAQVQFMSLR 225
>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
FORWARD LENGTH=912
Length = 912
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 130 RIKNNSGRGKRAKSNVTXXXXXXXXXHVRARRGQATDSHSLAERVRRGKINEKLRCLQNI 189
R K+ +G KR++S T +TD S+A R RR +I+++ + LQ++
Sbjct: 26 RHKSETGNTKRSRSTSTL----------------STDPQSVAARDRRHRISDRFKILQSM 69
Query: 190 VPGCYKTMGMAVMLDEIINYVQSLQHQVEF 219
VPG K M MLDE I+YV+ L+ Q+ +
Sbjct: 70 VPGGAK-MDTVSMLDEAISYVKFLKAQIWY 98