Miyakogusa Predicted Gene

Lj0g3v0277549.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277549.3 CUFF.18431.3
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    59   1e-09

>AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:11215259-11216212 FORWARD
           LENGTH=190
          Length = 190

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 33  KSPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEE-NIDIRSANSSMAGDSMLHVVH 91
           K P++E+ ETGS   + L   L+++F+F EIIR+L EE   +I  A  S+  D++ H +H
Sbjct: 105 KLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLH 164

Query: 92  AEIPQSYLHFGA-TKVSERLKRFVNG 116
            ++ +    +GA +++ ERL++ VN 
Sbjct: 165 CKVEEH--DYGARSQIPERLEKIVNS 188