Miyakogusa Predicted Gene

Lj0g3v0276079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276079.1 tr|G7IYN0|G7IYN0_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_3g013740 PE=4 SV=1,29.81,1e-18,A
Receptor for Ubiquitination Targets,F-box domain, cyclin-like;
F_box_assoc_1: F-box protein intera,CUFF.18310.1
         (477 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    96   6e-20
AT3G07870.1 | Symbols:  | F-box and associated interaction domai...    75   1e-13
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    71   2e-12
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    71   2e-12

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 179/424 (42%), Gaps = 48/424 (11%)

Query: 2   ARKVARKDNESESKELKIFSTDLPSEVITKILLGLPIKNIFICKSVCKGLNSRISNPDFA 61
           A K  R+  + + ++    S  LP E+IT+ILL LP K+I   + V K   +  S+P FA
Sbjct: 14  ATKRERRREDDDGEKASPESLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFA 73

Query: 62  QMHVKHTPTGFMLRTNDPDRLSRFVHLLEYEPEMFQNDGGDSFCFCKDGFIE-------- 113
           ++H+       +LR      L R   L+     ++  D    F    DG  +        
Sbjct: 74  KIHLD-----LILRNESVRSLHR--KLIVSSHNLYSLD----FNSIGDGIRDLAAVEHNY 122

Query: 114 PECENHVIFDHKFKLPVHVPKLILDNRDQTLNKGGQSLYTAYQPENSKFDVVNSCAGFLC 173
           P  ++  IF    +   +V   + D+R   L    +S    +       ++V S  G +C
Sbjct: 123 PLKDDPSIFSEMIR--NYVGDHLYDDRRVMLKLNAKSYRRNW------VEIVGSSNGLVC 174

Query: 174 LCDRNKEYFVVCNPIIGEFIRLPXXXXXXXXXXXXVDAIYTGFGFHDKTNQYKVVRILHK 233
           +       F+  NP  G+  RLP             +    GFGF   T+ YK+V+++  
Sbjct: 175 ISPGEGAVFLY-NPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVAT 233

Query: 234 RRIWREPKMIMTVEMHTLGTSTWRNVGDFDDNICELGFPTCV--NEALHWICLDD--NER 289
                  + I+   +++L   +WR + + +    +  + + V  N A+HW+  +   N+R
Sbjct: 234 ------SEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTESRHNQR 287

Query: 290 SISRFHFEHEKFDSLPFPQGSENGISGTRNITMGVLNECLYICDSSFLDIPIRMWIMKDY 349
            +  F  + E+F  +P P  +E+      N  +G LN  L + +S + D+   +W+M +Y
Sbjct: 288 VVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCY-DVHDDIWVMSEY 346

Query: 350 GVEESWTRAFSIDTMIRYCWPYGGLYWPVQKFKSPAAILLYHSSNCFIYYEFRRRQFKCF 409
           G  +SW+R       IR    Y  +  P+   K+   +LL    +  + Y F        
Sbjct: 347 GEAKSWSR-------IRINLLYRSMK-PLCSTKNDEEVLLELDGD-LVLYNFETNASSNL 397

Query: 410 KVCG 413
            +CG
Sbjct: 398 GICG 401


>AT3G07870.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:2510871-2512124
           FORWARD LENGTH=417
          Length = 417

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 102/236 (43%), Gaps = 35/236 (14%)

Query: 152 YTAYQPENSKFDVVNSCAGFLCLCDR-NKEYFVVCNPIIGEFIRLPXXXXXXXXXXXXVD 210
           + +  PE   FDVV SC G LCL D    +   + NP     + LP              
Sbjct: 110 FASSMPE---FDVVGSCNGLLCLSDSLYNDSLYLYNPFTTNSLELPECSNKYHD-----Q 161

Query: 211 AIYTGFGFHDKTNQYKVVRILHKRR-------IWREPKMIM----TVEMHTLGTST---- 255
            +  GFGFH+ T +YKV++I++ R        I+R    I      V++ TL + T    
Sbjct: 162 ELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQS 221

Query: 256 --WRNVGDFDDNICELGFPTCVNEALHWICLDDN---ERSISRFHFEHEKFDSLPFPQGS 310
             WR++G       +      VN  LH++        +R    F  E E+F  +P P   
Sbjct: 222 LSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCG 281

Query: 311 ENGISGTRNITM-GVLNECLYICDSSFLDIPIRMWIMKDYGVEESWTRAFSIDTMI 365
               +  R + + G L   +Y  +   LDI    W+MK YGV+ESW + +SI T +
Sbjct: 282 GLNRTNHRLVNLKGCLCAVVY-GNYGKLDI----WVMKTYGVKESWGKEYSIGTYL 332


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 147/360 (40%), Gaps = 82/360 (22%)

Query: 24  LPSEVITKILLGLPIKNIFICKSVCKGLNSRISNPDFAQMHVKHTPTGFMLRTNDPDRLS 83
           +P +++  I L LP K +  C+++ K     I++PDF + H+       +L+T D     
Sbjct: 4   IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHR-----VLQTGD----- 53

Query: 84  RFVHLLEYEPEMFQNDGGDSFCFCKDGFIEPECENHVIFDHKFKLPVHVPKLILDNRDQT 143
             + LL     ++  D  DS     D             +H  K                
Sbjct: 54  HLMILLRGALRLYSVDL-DSLDSVSD------------VEHPMK---------------- 84

Query: 144 LNKGGQSLYTAYQPENSKFDVVNSCAGFLCLCDRNKEYFVVCNPIIGEFIRLPXXXXXXX 203
             +GG +            +V  S  G + L +   +   V NP   +  RLP       
Sbjct: 85  --RGGPT------------EVFGSSNGLIGLSNSPTD-LAVFNPSTRQIHRLPPSSIDLP 129

Query: 204 XXXXXVDAIYTGFGFHDKTNQYKVVRILHKRRIWREPKMIMT----VEMHTLGTSTWRNV 259
                   ++ G G+   ++ YKVVR++ + +I  E ++  +    V++ +L  ++W+ +
Sbjct: 130 DGSSTRGYVFYGLGYDSVSDDYKVVRMV-QFKIDSEDELGCSFPYEVKVFSLKKNSWKRI 188

Query: 260 GDFDDNICEL-----------GFPTCVNEALHWICLDDNE----RSISRFHFEHEKFDSL 304
                +I  L           G+      +LHW+            I RF    E+F+ +
Sbjct: 189 ESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIV 248

Query: 305 PFPQGSENGISGTRNITMGVLNECL-YIC--DSSFLDIPIRMWIMKDYGVEESWTRAFSI 361
            FP+   NG    + + +GVL+ CL  +C  D S++D+    W+MK+Y V +SWT+ F++
Sbjct: 249 RFPEAVANGNVDIQ-MDIGVLDGCLCLMCNYDQSYVDV----WMMKEYNVRDSWTKVFTV 303


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 147/360 (40%), Gaps = 82/360 (22%)

Query: 24  LPSEVITKILLGLPIKNIFICKSVCKGLNSRISNPDFAQMHVKHTPTGFMLRTNDPDRLS 83
           +P +++  I L LP K +  C+++ K     I++PDF + H+       +L+T D     
Sbjct: 4   IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHR-----VLQTGD----- 53

Query: 84  RFVHLLEYEPEMFQNDGGDSFCFCKDGFIEPECENHVIFDHKFKLPVHVPKLILDNRDQT 143
             + LL     ++  D  DS     D             +H  K                
Sbjct: 54  HLMILLRGALRLYSVDL-DSLDSVSD------------VEHPMK---------------- 84

Query: 144 LNKGGQSLYTAYQPENSKFDVVNSCAGFLCLCDRNKEYFVVCNPIIGEFIRLPXXXXXXX 203
             +GG +            +V  S  G + L +   +   V NP   +  RLP       
Sbjct: 85  --RGGPT------------EVFGSSNGLIGLSNSPTD-LAVFNPSTRQIHRLPPSSIDLP 129

Query: 204 XXXXXVDAIYTGFGFHDKTNQYKVVRILHKRRIWREPKMIMT----VEMHTLGTSTWRNV 259
                   ++ G G+   ++ YKVVR++ + +I  E ++  +    V++ +L  ++W+ +
Sbjct: 130 DGSSTRGYVFYGLGYDSVSDDYKVVRMV-QFKIDSEDELGCSFPYEVKVFSLKKNSWKRI 188

Query: 260 GDFDDNICEL-----------GFPTCVNEALHWICLDDNE----RSISRFHFEHEKFDSL 304
                +I  L           G+      +LHW+            I RF    E+F+ +
Sbjct: 189 ESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIV 248

Query: 305 PFPQGSENGISGTRNITMGVLNECL-YIC--DSSFLDIPIRMWIMKDYGVEESWTRAFSI 361
            FP+   NG    + + +GVL+ CL  +C  D S++D+    W+MK+Y V +SWT+ F++
Sbjct: 249 RFPEAVANGNVDIQ-MDIGVLDGCLCLMCNYDQSYVDV----WMMKEYNVRDSWTKVFTV 303