Miyakogusa Predicted Gene

Lj0g3v0271879.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271879.2 Non Chatacterized Hit- tr|K3Z2A8|K3Z2A8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si020676,60.26,3e-19,Pcc1,EKC/KEOPS complex, subunit
Pcc1,CUFF.17975.2
         (97 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53045.1 | Symbols:  | unknown protein; Has 122 Blast hits to...   125   7e-30

>AT5G53045.1 | Symbols:  | unknown protein; Has 122 Blast hits to
          122 proteins in 57 species: Archae - 0; Bacteria - 0;
          Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0;
          Other Eukaryotes - 5 (source: NCBI BLink). |
          chr5:21508603-21509538 REVERSE LENGTH=96
          Length = 96

 Score =  125 bits (313), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 75/95 (78%), Gaps = 2/95 (2%)

Query: 1  MAALVKADAQSQR--QFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKL 58
          MAA V A  +S +   F+C+L+V F  EE+A I Y +LAVDKEL PDKV ++M VSN KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 59 SVHFEAVEARFLRASFSAFLDVLTLATNTIEEFGQ 93
          SVHFEA+EAR LRASFSAF+DVLTLAT TI+EFGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95