Miyakogusa Predicted Gene

Lj0g3v0260379.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260379.1 Non Chatacterized Hit- tr|B9HEU8|B9HEU8_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,43.75,0.00000000006, ,CUFF.17160.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   294   3e-80
AT1G45170.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   291   3e-79
AT1G45170.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   205   2e-53

>AT5G42960.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion,
           chloroplast, plastid, chloroplast envelope; EXPRESSED
           IN: 24 plant structures; EXPRESSED DURING: 13 growth
           stages; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:17235184-17236478 FORWARD LENGTH=213
          Length = 213

 Score =  294 bits (752), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 169/196 (86%), Gaps = 2/196 (1%)

Query: 1   MKAALKGRYDIDKNGGAAATLAVNAGDVKLRASITDATFINGPSLTGLVLAVEKPGSFII 60
           MKA++KG+YD DK  G   +LA NAGD+KLRA++TDAT + GP+LTGL LAVEKPGSFI+
Sbjct: 3   MKASIKGKYDTDKTSGIG-SLAFNAGDIKLRATMTDATLVAGPTLTGLALAVEKPGSFIV 61

Query: 61  DYNVPKKDLRFQFMNTVRVAEKPLNLTYIHSKADNRTILDGTLVFDAANKVSANYALDSG 120
           +YNVPKKD+RFQFMNTVR+AEKPLNLTYIHS+ADNRTI+DG+LV D+ANK+SAN+ + + 
Sbjct: 62  EYNVPKKDVRFQFMNTVRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTN 121

Query: 121 NCRLKYRYVHKGLTTFEPSYDVAKNTWDFAVSRRVYGDDSFGASYKTSSKVLGLEWSRNS 180
           NC++KY Y H GL TFEP YD+AKNTWDFAVSRR Y  D+  A+Y+TSSK+LG+EWSRN+
Sbjct: 122 NCKIKYTYAHGGLATFEPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRNN 181

Query: 181 KQTGCFKIVASVNLAE 196
           K +G FK+ ASVNLA+
Sbjct: 182 KASG-FKVCASVNLAD 196


>AT1G45170.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in
           18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:17096233-17097910 REVERSE
           LENGTH=213
          Length = 213

 Score =  291 bits (744), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 132/196 (67%), Positives = 164/196 (83%), Gaps = 1/196 (0%)

Query: 1   MKAALKGRYDIDKNGGAAATLAVNAGDVKLRASITDATFINGPSLTGLVLAVEKPGSFII 60
           MKA+ KG++D+DK+G + A+L  NAG+ KLRA++TDA+F+ GPS  GL LAVEKPG FII
Sbjct: 2   MKASFKGKFDVDKSG-SVASLTFNAGNAKLRATMTDASFVAGPSFNGLSLAVEKPGFFII 60

Query: 61  DYNVPKKDLRFQFMNTVRVAEKPLNLTYIHSKADNRTILDGTLVFDAANKVSANYALDSG 120
           DYNVPKKD+RFQFMNT+R+AEKPLNLTYIH + DNRTI+DG+ V D ANK+SANY + + 
Sbjct: 61  DYNVPKKDVRFQFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGTK 120

Query: 121 NCRLKYRYVHKGLTTFEPSYDVAKNTWDFAVSRRVYGDDSFGASYKTSSKVLGLEWSRNS 180
           NC+LKY YVH G+ TFEP YDVAKN WDFA+S ++YG D+  A+Y+TSSK+LGLEWS NS
Sbjct: 121 NCKLKYTYVHGGIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKMLGLEWSNNS 180

Query: 181 KQTGCFKIVASVNLAE 196
           K TG FK+ AS+NLAE
Sbjct: 181 KSTGSFKVCASMNLAE 196


>AT1G45170.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G42960.1); Has 60 Blast hits to 60 proteins in
           18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:17096233-17097910 REVERSE
           LENGTH=167
          Length = 167

 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 129/196 (65%), Gaps = 47/196 (23%)

Query: 1   MKAALKGRYDIDKNGGAAATLAVNAGDVKLRASITDATFINGPSLTGLVLAVEKPGSFII 60
           MKA+ KG++D+DK+G + A+L  NAG+ KLRA++TDA+F+ GPS  GL LAVEKPG FII
Sbjct: 2   MKASFKGKFDVDKSG-SVASLTFNAGNAKLRATMTDASFVAGPSFNGLSLAVEKPGFFII 60

Query: 61  DYNVPKKDLRFQFMNTVRVAEKPLNLTYIHSKADNRTILDGTLVFDAANKVSANYALDSG 120
           DYNVPKKD+RFQFMNT+R+AEKPLNLTYIH + DNRTI+DG+ V D ANK+SANY     
Sbjct: 61  DYNVPKKDVRFQFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYM---- 116

Query: 121 NCRLKYRYVHKGLTTFEPSYDVAKNTWDFAVSRRVYGDDSFGASYKTSSKVLGLEWSRNS 180
                                                     A+Y+TSSK+LGLEWS NS
Sbjct: 117 ------------------------------------------ATYQTSSKMLGLEWSNNS 134

Query: 181 KQTGCFKIVASVNLAE 196
           K TG FK+ AS+NLAE
Sbjct: 135 KSTGSFKVCASMNLAE 150