Miyakogusa Predicted Gene
- Lj0g3v0254679.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0254679.1 CUFF.16722.1
(510 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12010.1 | Symbols: | unknown protein; INVOLVED IN: response... 617 e-177
AT4G29780.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 521 e-148
AT3G63270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative h... 160 2e-39
AT3G55350.1 | Symbols: | PIF / Ping-Pong family of plant transp... 156 3e-38
AT3G19120.1 | Symbols: | PIF / Ping-Pong family of plant transp... 95 1e-19
AT1G72270.2 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED I... 87 4e-17
AT1G72270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome 6... 85 1e-16
AT5G41980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative h... 62 1e-09
>AT5G12010.1 | Symbols: | unknown protein; INVOLVED IN: response to
salt stress; LOCATED IN: chloroplast, plasma membrane,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29780.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink). | chr5:3877975-3879483 REVERSE
LENGTH=502
Length = 502
Score = 617 bits (1590), Expect = e-177, Method: Compositional matrix adjust.
Identities = 279/354 (78%), Positives = 323/354 (91%), Gaps = 1/354 (0%)
Query: 158 QRRLWVKDRSGAWWDECNTPDFPEEEFKKAFRMGRSTFDLICEELNSAIVKEDTTLRNAI 217
QRRLWVKDRS AWW+EC+ D+PEE+FKKAFRM +STF+LIC+ELNSA+ KEDT LRNAI
Sbjct: 149 QRRLWVKDRSRAWWEECSRLDYPEEDFKKAFRMSKSTFELICDELNSAVAKEDTALRNAI 208
Query: 218 PVRQRVAVCLWRLATGDPLRIVSKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPDEAA 277
PVRQRVAVC+WRLATG+PLR+VSK+FGLGISTCHKLVLEVC AIK VLMPKYLQWPD+ +
Sbjct: 209 PVRQRVAVCIWRLATGEPLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWPDDES 268
Query: 278 LRKIKGDFESVSGIPNVVGSMYTSHVPIIAPKISVADYFNKRHTERNQKTSYSITVQGVV 337
LR I+ FESVSGIPNVVGSMYT+H+PIIAPKISVA YFNKRHTERNQKTSYSIT+Q VV
Sbjct: 269 LRNIRERFESVSGIPNVVGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVV 328
Query: 338 DSRGVFTDVCIGWPGSMSDDRVLEKSALFQRA-NGGLLKGMWIVGSSGYPLMDWVLVPYT 396
+ +GVFTD+CIGWPGSM DD+VLEKS L+QRA NGGLLKGMW+ G G+PL+DWVLVPYT
Sbjct: 329 NPKGVFTDLCIGWPGSMPDDKVLEKSLLYQRANNGGLLKGMWVAGGPGHPLLDWVLVPYT 388
Query: 397 QQHLTWTQHAFNEKIGEVQKAAKDAFARLKGRWSCLQKRTEVKLQDLPIVLGACCVLHNI 456
QQ+LTWTQHAFNEK+ EVQ AK+AF RLKGRW+CLQKRTEVKLQDLP VLGACCVLHNI
Sbjct: 389 QQNLTWTQHAFNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNI 448
Query: 457 CEMKGDKIDPDLKLDLVDDEMVPEVALRSVSSMKARDAIAHNLLHHGLAGTSFL 510
CEM+ +K++P+L ++++DDE++PE LRSV++MKARD I+HNLLHHGLAGTSFL
Sbjct: 449 CEMREEKMEPELMVEVIDDEVLPENVLRSVNAMKARDTISHNLLHHGLAGTSFL 502
>AT4G29780.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins
in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519;
Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes
- 18 (source: NCBI BLink). | chr4:14579859-14581481
FORWARD LENGTH=540
Length = 540
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 238/354 (67%), Positives = 292/354 (82%), Gaps = 1/354 (0%)
Query: 158 QRRLWVKDRSGAWWDECNTPDFPEEEFKKAFRMGRSTFDLICEELNSAIVKEDTTLRNAI 217
RRLWVK+R+ WWD + PDFPE+EF++ FRM +STF+LICEEL++ + K++T LR+AI
Sbjct: 187 HRRLWVKERTTDWWDRVSRPDFPEDEFRREFRMSKSTFNLICEELDTTVTKKNTMLRDAI 246
Query: 218 PVRQRVAVCLWRLATGDPLRIVSKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPDEAA 277
P +RV VC+WRLATG PLR VS+RFGLGISTCHKLV+EVC AI VLMPKYL WP ++
Sbjct: 247 PAPKRVGVCVWRLATGAPLRHVSERFGLGISTCHKLVIEVCRAIYDVLMPKYLLWPSDSE 306
Query: 278 LRKIKGDFESVSGIPNVVGSMYTSHVPIIAPKISVADYFNKRHTERNQKTSYSITVQGVV 337
+ K FESV IPNVVGS+YT+H+PIIAPK+ VA YFNKRHTERNQKTSYSITVQGVV
Sbjct: 307 INSTKAKFESVHKIPNVVGSIYTTHIPIIAPKVHVAAYFNKRHTERNQKTSYSITVQGVV 366
Query: 338 DSRGVFTDVCIGWPGSMSDDRVLEKSALF-QRANGGLLKGMWIVGSSGYPLMDWVLVPYT 396
++ G+FTDVCIG PGS++DD++LEKS+L QRA G+L+ WIVG+SG+PL D++LVPYT
Sbjct: 367 NADGIFTDVCIGNPGSLTDDQILEKSSLSRQRAARGMLRDSWIVGNSGFPLTDYLLVPYT 426
Query: 397 QQHLTWTQHAFNEKIGEVQKAAKDAFARLKGRWSCLQKRTEVKLQDLPIVLGACCVLHNI 456
+Q+LTWTQHAFNE IGE+Q A AF RLKGRW+CLQKRTEVKLQDLP VLGACCVLHNI
Sbjct: 427 RQNLTWTQHAFNESIGEIQGIATAAFERLKGRWACLQKRTEVKLQDLPYVLGACCVLHNI 486
Query: 457 CEMKGDKIDPDLKLDLVDDEMVPEVALRSVSSMKARDAIAHNLLHHGLAGTSFL 510
CEM+ +++ P+LK ++ DD VPE +RS S++ RD I+HNLLH GLAGT L
Sbjct: 487 CEMRKEEMLPELKFEVFDDVAVPENNIRSASAVNTRDHISHNLLHRGLAGTRTL 540
>AT3G63270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative
harbinger transposase-derived nuclease
(InterPro:IPR006912); BEST Arabidopsis thaliana protein
match is: PIF / Ping-Pong family of plant transposases
(TAIR:AT3G55350.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr3:23375932-23377398 REVERSE LENGTH=396
Length = 396
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 166/332 (50%), Gaps = 43/332 (12%)
Query: 170 WWDEC----NTPDFPEEE---FKKAFRMGRSTFDLICEELNSAIVKEDTTLR-------- 214
WWD ++P P +E FK FR ++TF IC ++V+ED R
Sbjct: 44 WWDTFWLRNSSPSVPSDEDYAFKHFFRASKTTFSYIC-----SLVREDLISRPPSGLINI 98
Query: 215 --NAIPVRQRVAVCLWRLATGDPLRIVSKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQW 272
+ V ++VA+ L RLA+GD V FG+G ST ++ A++ +L+W
Sbjct: 99 EGRLLSVEKQVAIALRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIEALEE-RAKHHLRW 157
Query: 273 PDEAALRKIKGDFESVSGIPNVVGSMYTSHVPIIAPKISVADYFNKRHTERNQKTSYSIT 332
PD + +IK FE + G+PN G++ T+H+ + P + +D + +Q+ +YS+
Sbjct: 158 PDSDRIEEIKSKFEEMYGLPNCCGAIDTTHIIMTLPAVQASDDWC------DQEKNYSMF 211
Query: 333 VQGVVDSRGVFTDVCIGWPGSMSDDRVLEKSALFQRA-NGGLLKGM------------WI 379
+QGV D F ++ GWPG M+ ++L+ S F+ N +L G ++
Sbjct: 212 LQGVFDHEMRFLNMVTGWPGGMTVSKLLKFSGFFKLCENAQILDGNPKTLSQGAQIREYV 271
Query: 380 VGSSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEVQKAAKDAFARLKGRWSCLQKRT-EV 438
VG YPL+ W++ P+ H + + AFNE+ +V+ A AF +LKG W L K
Sbjct: 272 VGGISYPLLPWLITPHDSDHPSDSMVAFNERHEKVRSVAATAFQQLKGSWRILSKVMWRP 331
Query: 439 KLQDLPIVLGACCVLHNICEMKGDKIDPDLKL 470
+ LP ++ CC+LHNI GD + D+ L
Sbjct: 332 DRRKLPSIILVCCLLHNIIIDCGDYLQEDVPL 363
>AT3G55350.1 | Symbols: | PIF / Ping-Pong family of plant
transposases | chr3:20518518-20520690 FORWARD LENGTH=406
Length = 406
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 163/314 (51%), Gaps = 40/314 (12%)
Query: 170 WWDECNTPDF----PEEEFKKAFRMGRSTFDLICEELNSAIVKEDTTLR---------NA 216
WWD + + + F+ F++ R TFD IC ++VK D T + N
Sbjct: 54 WWDGFSRRIYGGSTDPKTFESVFKISRKTFDYIC-----SLVKADFTAKPANFSDSNGNP 108
Query: 217 IPVRQRVAVCLWRLATGDPLRIVSKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPDEA 276
+ + RVAV L RL +G+ L ++ + FG+ ST ++ +++ + +L WP +
Sbjct: 109 LSLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQITWRFVESMEERAI-HHLSWP--S 165
Query: 277 ALRKIKGDFESVSGIPNVVGSMYTSHVPIIAPKISVADYFNKRHTERNQKTSYSITVQGV 336
L +IK FE +SG+PN G++ +H+ + P + ++ + + ++S+T+Q V
Sbjct: 166 KLDEIKSKFEKISGLPNCCGAIDITHIVMNLPAVEPSN-----KVWLDGEKNFSMTLQAV 220
Query: 337 VDSRGVFTDVCIGWPGSMSDDRVLEKSALFQ------RANGGLLK-------GMWIVGSS 383
VD F DV GWPGS++DD VL+ S ++ R NG L +IVG S
Sbjct: 221 VDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDS 280
Query: 384 GYPLMDWVLVPYTQQHLTWTQHAFNEKIGEVQKAAKDAFARLKGRWSCLQKRTEVKLQD- 442
G+PL+ W+L PY + + Q FN++ E KAA+ A ++LK RW + + ++
Sbjct: 281 GFPLLPWLLTPYQGKPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNR 340
Query: 443 LPIVLGACCVLHNI 456
LP ++ CC+LHNI
Sbjct: 341 LPRIIFVCCLLHNI 354
>AT3G19120.1 | Symbols: | PIF / Ping-Pong family of plant
transposases | chr3:6609678-6611018 REVERSE LENGTH=446
Length = 446
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 38/300 (12%)
Query: 181 EEEFKKAFRMGRSTFDLICEELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATGDPLRIVS 240
+ ++ + + F + ++L I + +L P VA+ L RLA G + ++
Sbjct: 114 DARWRSLYGLSYPVFITVVDKLKPFITASNLSL----PADYAVAMVLSRLAHGCSAKTLA 169
Query: 241 KRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWP-DEAALRKIKGDFESVSGIPNVVGSMY 299
R+ L K+ V + T L P++++ P + L + FE ++ +PN+ G++
Sbjct: 170 SRYSLDPYLISKITNMVTRLLATKLYPEFIKIPVGKRRLIETTQGFEELTSLPNICGAID 229
Query: 300 TSHVPIIAPKISVADYFNKRHTERNQKTSY-------SITVQGVVDSRGVFTDVCIGWPG 352
++ V + +R T+ N + Y ++ +Q V D + +F DVC+ PG
Sbjct: 230 STPVKL------------RRRTKLNPRNIYGCKYGYDAVLLQVVADHKKIFWDVCVKAPG 277
Query: 353 SMSDDRVLEKSALFQRANGG--------LLKGM----WIVGSSGYPLMDWVLVPYTQQHL 400
D S L++R G ++G +IVG YPL+ +++ P++
Sbjct: 278 GEDDSSHFRDSLLYKRLTSGDIVWEKVINIRGHHVRPYIVGDWCYPLLSFLMTPFSPNGS 337
Query: 401 -TWTQHAFNEKIGEVQKAAKDAFARLKGRWSCLQKRTEVKLQDLPIVLGACCVLHNICEM 459
T ++ F+ + + + +A LK RW LQ V + P + ACCVLHN+C++
Sbjct: 338 GTPPENLFDGMLMKGRSVVVEAIGLLKARWKILQS-LNVGVNHAPQTIVACCVLHNLCQI 396
>AT1G72270.2 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN:
shoot apex, embryo, flower, seed; EXPRESSED DURING:
petal differentiation and expansion stage, E expanded
cotyledon stage, D bilateral stage; BEST Arabidopsis
thaliana protein match is: PIF / Ping-Pong family of
plant transposases (TAIR:AT3G55350.1). |
chr1:27209890-27211122 REVERSE LENGTH=410
Length = 410
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 58/295 (19%)
Query: 188 FRMGRSTFDLICEELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATGDPLRIVSKRFGL-G 246
FRM +STF + L+ +++P A ++RLA G + RFG
Sbjct: 101 FRMSKSTFFSLYSILS----------HSSLP---SFAATIFRLAHGASYECLVHRFGFDS 147
Query: 247 ISTCHKLVLEVCTAIKTVLMPKYLQWPDEAALRKIKGDFESVSGIPNVVGSMYTSHVPII 306
S + VC I L + L K DF S + +PN G + +
Sbjct: 148 TSQASRSFFTVCKLINEKLSQQ---------LDDPKPDF-SPNLLPNCYGVVGFGRFEVK 197
Query: 307 APKISVADYFNKRHTERNQKTSYSITVQGVVDSRGVFTDVCIGWPGSMSDDRVLEKSALF 366
+ SI VQ +VDS G F D+ GWP +M + + ++ LF
Sbjct: 198 GKLLGAKG---------------SILVQALVDSNGRFVDISAGWPSTMKPEAIFRQTKLF 242
Query: 367 QRA-----------NGGLLKGMWIVGSSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEV- 414
A G+L +I+G S PL+ W++ PY LT + +F E+ V
Sbjct: 243 SIAEEVLSGAPTKLGNGVLVPRYILGDSCLPLLPWLVTPY---DLTSDEESFREEFNNVV 299
Query: 415 ---QKAAKDAFARLKGRWSCLQKRTEVK-LQDLPIVLGACCVLHNICEMKGDKID 465
+ + AFA+++ RW L K+ + + ++ +P V+ C+LHN GD D
Sbjct: 300 HTGLHSVEIAFAKVRARWRILDKKWKPETIEFMPFVITTGCLLHNFLVNSGDDDD 354
>AT1G72270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome 60S
biogenesis N-terminal (InterPro:IPR021714); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins
in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344;
Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes
- 12 (source: NCBI BLink). | chr1:27199733-27211122
REVERSE LENGTH=2845
Length = 2845
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 123/295 (41%), Gaps = 58/295 (19%)
Query: 188 FRMGRSTFDLICEELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATGDPLRIVSKRFGL-G 246
FRM +STF + L+ +++P A ++RLA G + RFG
Sbjct: 101 FRMSKSTFFSLYSILS----------HSSLP---SFAATIFRLAHGASYECLVHRFGFDS 147
Query: 247 ISTCHKLVLEVCTAIKTVLMPKYLQWPDEAALRKIKGDFESVSGIPNVVGSMYTSHVPII 306
S + VC I K Q D+ K DF S + +PN G + +
Sbjct: 148 TSQASRSFFTVCKLINE----KLSQQLDDP-----KPDF-SPNLLPNCYGVVGFGRFEVK 197
Query: 307 APKISVADYFNKRHTERNQKTSYSITVQGVVDSRGVFTDVCIGWPGSMSDDRVLEKSALF 366
+ SI VQ +VDS G F D+ GWP +M + + ++ LF
Sbjct: 198 GKLLGAKG---------------SILVQALVDSNGRFVDISAGWPSTMKPEAIFRQTKLF 242
Query: 367 QRA-----------NGGLLKGMWIVGSSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEV- 414
A G+L +I+G S PL+ W++ PY LT + +F E+ V
Sbjct: 243 SIAEEVLSGAPTKLGNGVLVPRYILGDSCLPLLPWLVTPY---DLTSDEESFREEFNNVV 299
Query: 415 ---QKAAKDAFARLKGRWSCLQKRTEVK-LQDLPIVLGACCVLHNICEMKGDKID 465
+ + AFA+++ RW L K+ + + ++ +P V+ C+LHN GD D
Sbjct: 300 HTGLHSVEIAFAKVRARWRILDKKWKPETIEFMPFVITTGCLLHNFLVNSGDDDD 354
>AT5G41980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative
harbinger transposase-derived nuclease
(InterPro:IPR006912); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G43722.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:16793765-16794889 FORWARD LENGTH=374
Length = 374
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 123/306 (40%), Gaps = 23/306 (7%)
Query: 180 PEEEFKKAFRMGRSTFDLICEELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATGDPLRIV 239
P E+ + FRM + F +C+ L + + T N I + ++A+ L+ + R V
Sbjct: 38 PNEQCFENFRMDKPVFYKLCDLLQTRGLLRHT---NRIKIEAQLAIFLFIIGHNLRTRAV 94
Query: 240 SKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPDEAALRKIKGDFESVSGIPNVVGSMY 299
+ F T + V A+ + + + L F+ + VG +
Sbjct: 95 QELFCYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFK------DCVGVVD 148
Query: 300 TSHVPIIAPKISVADYFNKRHTERNQKTSYSITVQGVVDSRGVFTDVCIGWPGSMSDDRV 359
+ H+P++ + N N + ++ D R F V GW GS SD +V
Sbjct: 149 SFHIPVMVGVDEQGPFRNG-----NGLLTQNVLAASSFDLR--FNYVLAGWEGSASDQQV 201
Query: 360 LEKSALFQRANGGLLKGMWIVGSSGYPLMDWVLVPYTQQHLTWTQHA---FNEKIGEVQK 416
L +AL +R + +G + + + YP + + PY + A FNE+ + +
Sbjct: 202 L-NAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGVSTNSREEAKEMFNERHKLLHR 260
Query: 417 AAKDAFARLKGRWSCLQKRTEVKLQDLPIVLGACCVLHNICEMKGDKIDPDLKLDLVDDE 476
A F LK R+ L LQ ++ A C LHN + +K D DL + ++E
Sbjct: 261 AIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALHNYVRL--EKPD-DLVFRMFEEE 317
Query: 477 MVPEVA 482
+ E
Sbjct: 318 TLAEAG 323