Miyakogusa Predicted Gene

Lj0g3v0231269.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231269.1 tr|Q8S9I4|Q8S9I4_ARATH AT4g02720/T10P11_1
OS=Arabidopsis thaliana GN=At4g02720 PE=2 SV=1,58.14,2e-18,seg,NULL;
NF-KAPPA B ACTIVATING PROTEIN,Protein of unknown function DUF926;
SynMuv_product,Protein o,CUFF.15245.1
         (463 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02720.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   150   2e-36

>AT4G02720.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 14 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF926
           (InterPro:IPR009269); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:1204545-1205813 REVERSE LENGTH=422
          Length = 422

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/73 (94%), Positives = 71/73 (97%)

Query: 391 PMPLPKPEGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGLSADEIQKFESLGYVMSG 450
           PMPLPK EGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGL+A+EIQKFE LGYVMSG
Sbjct: 289 PMPLPKAEGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGLNAEEIQKFEDLGYVMSG 348

Query: 451 SRHQRMNAIRIRK 463
           SRHQRMNAIRIRK
Sbjct: 349 SRHQRMNAIRIRK 361



 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 69/86 (80%), Gaps = 3/86 (3%)

Query: 66  NALPKKFGRRNGSYLDRDGKDWQRSESESDEELKGLSFEEYRRLKRQKMRKALKHCIWNV 125
           N+LP++FG+ +G YLDRD ++ +RS S+SDEELKGLS EEYRR KR KMRK+ K C W  
Sbjct: 4   NSLPRRFGKNHG-YLDRDYRNGRRSGSDSDEELKGLSHEEYRRQKRLKMRKSAKFCFWEN 62

Query: 126 TPSPPRNENEDAEDDFKAEEVPEKFG 151
           TPSPPR++NED++++  A+E+ +K G
Sbjct: 63  TPSPPRDQNEDSDEN--ADEIQDKNG 86