Miyakogusa Predicted Gene

Lj0g3v0227459.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0227459.3 Non Chatacterized Hit- tr|I1H9E8|I1H9E8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,49.48,5e-19,Ribonuclease H-like,Ribonuclease H-like domain;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.14833.3
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    46   4e-06

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 50/100 (50%)

Query: 8   LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIE 67
           L+G  +   C A     + KD L+   + +  IR ++K+V+ S     +F    ++  + 
Sbjct: 327 LDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVP 386

Query: 68  YKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKF 107
            + ++ +D + +WN TY++L AA + +  F  L   DP +
Sbjct: 387 SEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDY 426