Miyakogusa Predicted Gene

Lj0g3v0215509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0215509.1 Non Chatacterized Hit- tr|A5APC0|A5APC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,96.25,5.00264e-43,LSM,Ribonucleoprotein LSM domain; no
description,NULL; Sm-like ribonucleoproteins,Like-Sm (LSM)
doma,CUFF.13894.1
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotein...   173   2e-44
AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family...    59   7e-10
AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:286...    56   4e-09

>AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotein
          family protein | chr5:9815904-9817304 FORWARD
          LENGTH=129
          Length = 129

 Score =  173 bits (438), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:7128979-7130371 FORWARD LENGTH=131
          Length = 131

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECYI 61
          +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T KDG +  ++   +I
Sbjct: 7  IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ ++++ +PD
Sbjct: 66 RGSKVRFMVIPD 77


>AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 |
          chr1:28625957-28627080 FORWARD LENGTH=128
          Length = 128

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECYI 61
          +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T KDG +  ++   +I
Sbjct: 7  IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ +++L +PD
Sbjct: 66 RGSLVRFLVIPD 77