Miyakogusa Predicted Gene

Lj0g3v0206449.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0206449.2 Non Chatacterized Hit- tr|B6VCR9|B6VCR9_TRIMO
Putative expressed protein (Fragment) OS=Triticum
mono,64.94,3e-18,coiled-coil,NULL; seg,NULL,CUFF.13214.2
         (461 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23980.1 | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-866744...   422   e-118

>AT3G23980.1 | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-8667440
           REVERSE LENGTH=714
          Length = 714

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/481 (51%), Positives = 325/481 (67%), Gaps = 41/481 (8%)

Query: 2   ESSSRRSRPSFLDSLNVTKPSSGSPFPQPLQDSSMYNNLESRSNYLPGSNYFHKPSEETK 61
           E++ +RSRPSFLDSLN+++    +P  Q        + + S  + L GS+ F  PS    
Sbjct: 254 EATVKRSRPSFLDSLNISR----APETQYQHPEIQADLVTSSGSQLSGSDGFG-PS---Y 305

Query: 62  IVGHL-----SDLTTSS-----PFEHLTDPSVLNSNSQDTLMTNARENG-MEKKHDYYSP 110
           I G       S LT+ +     PFE            + +L   A  NG M    D+  P
Sbjct: 306 ISGRRDSNGPSSLTSGASDYPNPFEKF----------RSSLYPAA--NGVMPGFTDFSMP 353

Query: 111 SQNEDFAALEQHIEDLTQEKFSLQXXXXXXXXXXXXXXTENSSLTDNYNQQRSVVNQLKA 170
            QN+DF ALEQHIEDLTQEKFSLQ              +ENSS+TD YNQQR +VNQLK 
Sbjct: 354 KQNDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKD 413

Query: 171 DMEVLQEDIKTHLDQFESIRSEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELK 230
           DME L + I+  + + ES+R EYANAQLECNAADER+++LASEVI LE+KALRLRS+ELK
Sbjct: 414 DMERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRLRSNELK 473

Query: 231 LEKQLENAQAELSSYRKKMSTLDKERRDLQSTIDALQEEKKVLLSKLRKASGIGKSIE-- 288
           LE++LE AQ E+ SY+KK+ +L+K+R+DLQSTI ALQEEKKVL + ++KAS  GKS +  
Sbjct: 474 LERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLS 533

Query: 289 -SQTSKRDVSTSTEDIASEDPA-----LNTSGSGINDNAEPSSSLVAETRHSSFGVSPVN 342
            + TS+++VSTSTE +A  D         T  + + ++   +++++ ETR  +     ++
Sbjct: 534 KNSTSRKNVSTSTEGLAISDTTPESSNQETDSTTLLESDSSNTAIIPETRQLTLEGFSLS 593

Query: 343 IPHDQMRMIENINALISELASEKEELVKALASESSECSRMKEINRELSRKLEVQTQRLEL 402
           +P DQMR+I NIN LI+ELA EKEELV+AL+SE S  + ++E+N+ELSRKLE QTQRLEL
Sbjct: 594 VPADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQELNKELSRKLEAQTQRLEL 653

Query: 403 LTAQNMVTENISA--KEPDSRVMYENTPYADEGDEVVERVLGWIMKLFPGGPSKRRTSKL 460
           +TAQ M  +N+S   ++PD+ V+ E TP ADEGDEVVERVLGWIMK+FPGGPSKRRTSKL
Sbjct: 654 VTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSKL 713

Query: 461 L 461
           L
Sbjct: 714 L 714