Miyakogusa Predicted Gene

Lj0g3v0202139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0202139.1 Non Chatacterized Hit- tr|Q9LE84|Q9LE84_ARATH
Putative uncharacterized protein AT4g08820
OS=Arabidop,34.59,9e-19,seg,NULL; Ribonuclease H-like,Ribonuclease
H-like domain; DUF4283,Domain of unknown function
DUF4283,gene.g15584.t1.1
         (362 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01050.1 | Symbols:  | zinc ion binding;nucleic acid binding ...   140   1e-33
AT5G36228.1 | Symbols:  | nucleic acid binding;zinc ion binding ...    51   1e-06
AT3G31430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    50   2e-06

>AT2G01050.1 | Symbols:  | zinc ion binding;nucleic acid binding |
           chr2:68337-69884 REVERSE LENGTH=515
          Length = 515

 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 113/204 (55%)

Query: 3   YAEGDESFPMFSIDPRTYVEICKLLEDCLVVKLLGKHIGYGALCEKLRVKGKLSGGYEVH 62
           + +G++  P+ +I       +  L + C++VK+LG  I    L  KLR   K SG   V 
Sbjct: 53  FPDGEDEEPVITIGEEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVM 112

Query: 63  DVHHGYFLVNFDKKEDKGRVTSEAPWLIYDHYLAVKPWTPDFVAANSTINTIVVWIRIPG 122
           D+   +F++ F+ +E+     +  PW +  +YL V+ W+  F      I T  VW+R+  
Sbjct: 113 DLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSN 172

Query: 123 LGFQFYGKNILMTLASAVGTPIKVDLNTTYMHRGKFARICVEIDLNKPVLGVVGLEGTWY 182
           + + +Y + +LM +A  +G P+KVD+NT    +G+FAR+C+E++L KP+ G V + G  Y
Sbjct: 173 IPYNYYHRCLLMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRY 232

Query: 183 NVEYEGLHSLFLKCRYYGHLSRNC 206
            V YEGL  +   C  YGHL  +C
Sbjct: 233 FVAYEGLSKICSSCGIYGHLVHSC 256


>AT5G36228.1 | Symbols:  | nucleic acid binding;zinc ion binding |
           chr5:14271691-14272776 FORWARD LENGTH=361
          Length = 361

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 69  FLVNFDKKEDKGRVTSEAPWLIYDHYLAVKPWTPDFVAANSTINTIVVWIRIPGLGFQFY 128
           F V F  + D       APW+  + ++A++ W  DF      +  I VW+ I G+   + 
Sbjct: 78  FQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWE-DF-PTEDFLTFIDVWVHIRGIPLPYV 135

Query: 129 GKNILMTLASAVGTPIKVDLNTTYMHRGKFARICVEIDLNKPV-----LGVVGLEGTWYN 183
            +  +  +AS +G  + +D N     +  F R+ V +D  +P+     +     E     
Sbjct: 136 SERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRERAMIG 195

Query: 184 VEYEGLHSLFLKCRYYGHLSRNC 206
            EYE L  +   C    H   +C
Sbjct: 196 FEYEKLQRVCTNCCRVNHQVSHC 218


>AT3G31430.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits
           to 291 proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:12795861-12796871 REVERSE LENGTH=336
          Length = 336

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 51  VKGKLSGGYEVHDVHHGYFLVNFDKKEDKGRVTSEAPWLIYDHYLAVKPWTPDFVAANST 110
           V G++  G + H +        F  +E    V    PW   D  + ++ W P        
Sbjct: 163 VHGRIMEGRQFHFI--------FTLEESLETVLRRGPWAFNDWMILLQRWEPQI----PL 210

Query: 111 INTIVVWIRIPGLGFQFYGKNILMTLASAVGTPIKVDLNTTYMHRGKFARICVEIDLNKP 170
              I  W++I G+ FQF  + ++  +  A+G  +  D N   + R  FAR+ +  D+  P
Sbjct: 211 FPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHP 270

Query: 171 V 171
           +
Sbjct: 271 L 271