Miyakogusa Predicted Gene

Lj0g3v0185899.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0185899.2 tr|A9TLG3|A9TLG3_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,48.31,3e-18,seg,NULL; mTERF,Mitochodrial transcription
termination factor-related; SUBFAMILY NOT NAMED,NULL; CGI,CUFF.11831.2
         (297 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14605.1 | Symbols:  | Mitochondrial transcription terminatio...   302   2e-82
AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription ter...    70   1e-12
AT4G02990.1 | Symbols:  | Mitochondrial transcription terminatio...    67   1e-11
AT2G44020.1 | Symbols:  | Mitochondrial transcription terminatio...    64   9e-11
AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription term...    62   6e-10
AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription term...    62   7e-10
AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription term...    61   7e-10
AT5G55580.1 | Symbols:  | Mitochondrial transcription terminatio...    57   2e-08
AT1G61980.1 | Symbols:  | Mitochondrial transcription terminatio...    57   2e-08
AT2G34620.1 | Symbols:  | Mitochondrial transcription terminatio...    49   3e-06
AT1G78930.1 | Symbols:  | Mitochondrial transcription terminatio...    49   4e-06
AT1G79220.1 | Symbols:  | Mitochondrial transcription terminatio...    49   4e-06

>AT4G14605.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:8378815-8380564 FORWARD
           LENGTH=493
          Length = 493

 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/278 (56%), Positives = 204/278 (73%), Gaps = 13/278 (4%)

Query: 29  QLSFHAKAFYCQAKSGID----GSLNLRVMPPTLLXXXXXXXXXVLCLFFKKQGLSNAVA 84
           QL F  +  + Q  +GI        + R +PP L+         VL LFFKKQGLSN+++
Sbjct: 26  QLWFTGRLSFRQETNGIRLKNRVEFSPRPVPPNLIAAEKEEAKAVLTLFFKKQGLSNSLS 85

Query: 85  ARTINKSDLFIDHLVSKLHSKHKSRYLAGRELTTLEIRDALIPYLESLLEEHGDVLGDLV 144
           +R INKSDLFIDHLVS+LHS HK+RYL GRELTTLEIRD+LIPYLE L EEHGD+L +LV
Sbjct: 86  SRLINKSDLFIDHLVSRLHSVHKARYLVGRELTTLEIRDSLIPYLEQLHEEHGDLLAELV 145

Query: 145 ESYPNPPVKEKSTLAIPT--------TSNVVDSKKLKAVSRVDEIDPAAGKLRPHIVYLM 196
            S+P+PP + +   + P         T +  D++KL+AVSRV E+D   G LRP  +YL+
Sbjct: 146 VSFPDPPAEPRLVASSPVSVLPPRGDTDSAADTRKLRAVSRVSELD-TEGALRPQTLYLL 204

Query: 197 ELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGISL 256
           +LG+++EQ+++I R+F AF YYSL+GKIKPVVEF L+LG+PK +I TIL KRPQ+CGISL
Sbjct: 205 DLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCKRPQICGISL 264

Query: 257 SENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSLRR 294
           ++NLKPTM FLE+ GIDK QW K+I RFPA+LTYS ++
Sbjct: 265 TDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQK 302



 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 8/142 (5%)

Query: 155 KSTLAIPTTSNVVDSKKLKAVSRVDEI-DPAAGKLRPHIVYLMELGMDIEQVRSIIRRFP 213
           K T+A   T  +  ++  K +SR   I   +  KL   + +L + G+  EQ+  I+ R P
Sbjct: 269 KPTMAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEFLSQTGLTEEQIGRILTRCP 328

Query: 214 AFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGISLSENLKPTMKFL--ESFG 271
               YS+E K++P +E+F  L V   ++A +L + PQ  G+S+  NLKP  +F   + FG
Sbjct: 329 NIMSYSVEDKLRPTMEYFRSLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFG 385

Query: 272 IDKKQWPKVIYRFPALLTYSLR 293
           +D  +   +I R+ AL T+SL+
Sbjct: 386 LD--EIGIMISRYGALYTFSLK 405



 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 187 KLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILT 246
            L+P + +L  LG+D  Q   II RFPA   YS + K+   VEF  + G+ +E I  ILT
Sbjct: 267 NLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQ-KLTSTVEFLSQTGLTEEQIGRILT 325

Query: 247 KRPQLCGISLSENLKPTMKFLESFGID 273
           + P +   S+ + L+PTM++  S  +D
Sbjct: 326 RCPNIMSYSVEDKLRPTMEYFRSLNVD 352



 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 187 KLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILT 246
           KLRP + Y   L +D   V  ++ R P     S+E  +KPV EFFLE G   + I  +++
Sbjct: 338 KLRPTMEYFRSLNVD---VAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMIS 394

Query: 247 KRPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSLR 293
           +   L   SL EN+ P   + ++    K +    + +FP    YSL+
Sbjct: 395 RYGALYTFSLKENVMPKWDYFQTMDYPKSE----LVKFPQFFGYSLQ 437


>AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription
           termination factor family protein | chr2:9270886-9273307
           FORWARD LENGTH=641
          Length = 641

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 62/106 (58%)

Query: 192 IVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQL 251
           I YL E G+  E+V  ++   P     S+E + KP+V++F  LG+PKE +  IL  +P L
Sbjct: 356 INYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPIL 415

Query: 252 CGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSLRREYR 297
             I L + + P ++FL+  GI  +    ++ +FP+LLT SL ++ R
Sbjct: 416 YCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIR 461



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 190 PHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFL-ELGVPKENIATILTKR 248
           P + +L E+G+  E + +++ +FP+    SL  KI+PVV F L   GV +++I  ++   
Sbjct: 426 PKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMD 485

Query: 249 PQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTY---SLRREYR 297
           P L G S+   L+P M++  S GI   Q  ++I  FP LL Y   +LR +YR
Sbjct: 486 PALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKYR 537



 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 187 KLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILT 246
           + +P + Y   LG+  E ++ I+   P      LE  I P V F  E+G+P E I  +L 
Sbjct: 387 RWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLV 446

Query: 247 KRPQLCGISLSENLKPTMKF-LESFGIDKKQWPKVIYRFPALLTYSL 292
           K P L   SL + ++P + F L   G+ +K   KVI   PALL  S+
Sbjct: 447 KFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSI 493


>AT4G02990.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:1322158-1323783 FORWARD
           LENGTH=541
          Length = 541

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 59/108 (54%)

Query: 186 GKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATIL 245
           G +   + YL+ +G+   ++  I+ R+P      +   IKP+VE+   LG+P+   A ++
Sbjct: 249 GTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLI 308

Query: 246 TKRPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSLR 293
            KRP + G  L + +KP ++ L+ F + +   P +I ++P ++   L+
Sbjct: 309 EKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEIIGIDLK 356



 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 57/105 (54%)

Query: 188 LRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTK 247
           L P + YL  L +    V  ++ R+P    + LEG +   V + + +GV +  I  ILT+
Sbjct: 215 LAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTR 274

Query: 248 RPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSL 292
            P++ G+ ++  +KP +++LE  GI +    ++I + P +L + L
Sbjct: 275 YPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFEL 319



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 22/158 (13%)

Query: 153 KEKSTLAIPTTSNVVDSKKLKAVSRV-------------DEIDP-----AAGKLRPHIVY 194
           K + + ++ +  +++D  K KA +R              DE+D       A  ++  + +
Sbjct: 94  KGRDSKSLYSRPSLLDMNKEKAANRAKVYEFLRGIGIVPDELDGLELPVTADVMKERVEF 153

Query: 195 LMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGI 254
           L +LG+ IE     I  +P     S++  + PV+++  +LGV K      L + PQ+   
Sbjct: 154 LHKLGLTIED----INNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQVLHS 209

Query: 255 SLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSL 292
           S+  +L P +K+L+   I     P+V+ R+P +L + L
Sbjct: 210 SVVIDLAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKL 247



 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/105 (21%), Positives = 53/105 (50%)

Query: 190 PHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRP 249
           P + YL +LG+        +RR+P   + S+   + PVV++   L +   ++  +L + P
Sbjct: 181 PVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERYP 240

Query: 250 QLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSLRR 294
           ++ G  L   +  ++ +L   G+ +++   ++ R+P +L   + R
Sbjct: 241 EVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVAR 285


>AT2G44020.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:18217737-18219260 REVERSE
           LENGTH=507
          Length = 507

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 60/103 (58%)

Query: 186 GKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATIL 245
           G +   + YL+ +G+    +  ++ ++P      +   IKP+V++ + +G+PK+ +A +L
Sbjct: 214 GTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARML 273

Query: 246 TKRPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALL 288
            KR  + G +L E +KP +  L SFG+ K+  P +I ++P +L
Sbjct: 274 EKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQIL 316



 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 55/101 (54%)

Query: 188 LRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTK 247
           L P + YL ++G+   ++   ++ +P   + S+  ++ PVV+F   L V K+++  +L K
Sbjct: 144 LIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMK 203

Query: 248 RPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALL 288
            P+L G  L   +  ++ +L S G+  +    ++ ++P LL
Sbjct: 204 YPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLL 244



 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 37/177 (20%)

Query: 121 IRDALIPYLESLLEEHG---DVLGDLVESYPNPPVKEKSTLAIPTTSNVVDSKKLKAVSR 177
           +R  LIP L + LE+ G     LG+ V++YP                      ++   S 
Sbjct: 140 VRKNLIPVL-AYLEKIGISRSKLGEFVKNYP----------------------QVLHASV 176

Query: 178 VDEIDPAAGKLRPHIVYLMELGMDIEQ--VRSIIRRFPAFAYYSLEGKIKPVVEFFLELG 235
           V E+ P    LR         G+D+E+  +  ++ ++P    + LEG +   V + + +G
Sbjct: 177 VVELAPVVKFLR---------GLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIG 227

Query: 236 VPKENIATILTKRPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSL 292
           V   +I  ++T+ P L G+ +   +KP + +L S G+ KK   +++ +   ++ Y+L
Sbjct: 228 VSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNL 284


>AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903784 FORWARD LENGTH=363
          Length = 363

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)

Query: 177 RVDEIDPAAGKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGV 236
           R+DE      +L P +  L  LG +  +V S I +FP    +S+E K+ P++ FF  LGV
Sbjct: 73  RLDE------RLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGV 126

Query: 237 PKENIATILTKRPQLCGISLSENLKPTMKFLESFGIDKKQW-PKVIYRFPALLTYSLRRE 295
           P+  +  ++   P+L   S+   L   + FL S G+D+     KV+ + P L+ YS+ + 
Sbjct: 127 PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKR 186

Query: 296 YR 297
            R
Sbjct: 187 LR 188



 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 187 KLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKEN-IATIL 245
           KL P + +   LG+   Q+  +I   P    YS++ K+  +V F   LG+ ++  I  +L
Sbjct: 113 KLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVL 172

Query: 246 TKRPQLCGISLSENLKPTMKFLE-SFGIDKKQWPKVIYRFPALLTYSLRR 294
            K P L G S+ + L+PT +FL+ S G+ +     V+  FP LL   + +
Sbjct: 173 VKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNK 222


>AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903413 FORWARD LENGTH=333
          Length = 333

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)

Query: 177 RVDEIDPAAGKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGV 236
           R+DE      +L P +  L  LG +  +V S I +FP    +S+E K+ P++ FF  LGV
Sbjct: 73  RLDE------RLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGV 126

Query: 237 PKENIATILTKRPQLCGISLSENLKPTMKFLESFGIDKKQW-PKVIYRFPALLTYSLRRE 295
           P+  +  ++   P+L   S+   L   + FL S G+D+     KV+ + P L+ YS+ + 
Sbjct: 127 PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKR 186

Query: 296 YR 297
            R
Sbjct: 187 LR 188



 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 187 KLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKEN-IATIL 245
           KL P + +   LG+   Q+  +I   P    YS++ K+  +V F   LG+ ++  I  +L
Sbjct: 113 KLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVL 172

Query: 246 TKRPQLCGISLSENLKPTMKFLE-SFGIDKKQWPKVIYRFPALLTYSLRR 294
            K P L G S+ + L+PT +FL+ S G+ +     V+  FP LL   + +
Sbjct: 173 VKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNK 222


>AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903904 FORWARD LENGTH=378
          Length = 378

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)

Query: 177 RVDEIDPAAGKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGV 236
           R+DE      +L P +  L  LG +  +V S I +FP    +S+E K+ P++ FF  LGV
Sbjct: 73  RLDE------RLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGV 126

Query: 237 PKENIATILTKRPQLCGISLSENLKPTMKFLESFGIDKKQW-PKVIYRFPALLTYSLRRE 295
           P+  +  ++   P+L   S+   L   + FL S G+D+     KV+ + P L+ YS+ + 
Sbjct: 127 PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKR 186

Query: 296 YR 297
            R
Sbjct: 187 LR 188



 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 187 KLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKEN-IATIL 245
           KL P + +   LG+   Q+  +I   P    YS++ K+  +V F   LG+ ++  I  +L
Sbjct: 113 KLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVL 172

Query: 246 TKRPQLCGISLSENLKPTMKFLE-SFGIDKKQWPKVIYRFPALLTYSLRR 294
            K P L G S+ + L+PT +FL+ S G+ +     V+  FP LL   + +
Sbjct: 173 VKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNK 222


>AT5G55580.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:22515601-22517408 FORWARD
           LENGTH=496
          Length = 496

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 194 YLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCG 253
           YL+ +G+    ++ ++ R P    Y++E  +K  + F + LG+P   I  I+   P L  
Sbjct: 225 YLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFS 284

Query: 254 ISLSENLKPTMKFL-ESFGIDKKQWPKVIYRFPALLTYSL 292
            S+  +L+PT+++L E  GI +    KV+   P +L   L
Sbjct: 285 YSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRL 324



 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 38/145 (26%)

Query: 186 GKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFL------------- 232
             L+ HI +LM LG+   ++  I+   P+   YS+E  ++P + + +             
Sbjct: 253 NNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKV 312

Query: 233 -------------------------ELGVPKENIATILTKRPQLCGISLSENLKPTMKFL 267
                                    ELG P++++  ++ K PQL   S+ +   P + FL
Sbjct: 313 VQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFL 372

Query: 268 ESFGIDKKQWPKVIYRFPALLTYSL 292
            S G+      KV+     +L+ SL
Sbjct: 373 RSIGMCNSDILKVLTSLTQVLSLSL 397


>AT1G61980.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22908162-22909418 FORWARD
           LENGTH=418
          Length = 418

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query: 198 LGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGISLS 257
           LG D+E V ++ +R+P F  +S E KI   +E FL LG  ++  + ++ + PQ  G+S +
Sbjct: 267 LGFDVEYVWTVFKRWPNFLTHS-EKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLS-A 324

Query: 258 ENLKPTMKFLESFGIDKKQWP-KVIYRFPALLTYSLRR 294
           E +K   +FL    + K  WP K +   PA+L YSL +
Sbjct: 325 EMVKKKTEFL----VKKMNWPLKALVSNPAVLGYSLEK 358


>AT2G34620.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:14577196-14578203 FORWARD
           LENGTH=303
          Length = 303

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 206 RSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGISLSENLKPTMK 265
           R +I++ P     S+E ++KP + +   LG+  +++  +  + P L   S+   L P ++
Sbjct: 142 RRVIKKCPRLLISSVEDQLKPALFYLQRLGL--KDLEALAYQDPILLVSSVEHTLIPKLR 199

Query: 266 FLESFGIDKKQWPKVIYRFPALLTYSLRREYR 297
           FLES G  + +   +I R PAL T+S+   ++
Sbjct: 200 FLESIGFSRPEAIGMILRCPALFTFSIENNFK 231


>AT1G78930.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:29678285-29680648 REVERSE
           LENGTH=591
          Length = 591

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 227 VVEFFLELGVPKENIATILTKRPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPA 286
           VV F  +LG  KE +  IL + P++ G S+ + L+  + FL  FG+    +P++I ++P 
Sbjct: 409 VVCFLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPE 468

Query: 287 LLTY 290
            L Y
Sbjct: 469 FLIY 472



 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 188 LRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTK 247
           L+  +++L   G+       II+++P F  Y  +  + P +++ +E+G+ +  IA ++ K
Sbjct: 442 LQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRK 501

Query: 248 RPQLCGISLSENLKPTMKFLESFGIDKKQWP-KVIYRFPALLTYSLRR 294
              + G S+ + L+P  +FL    ++  + P + +  +P   +YSL +
Sbjct: 502 FSPILGYSIDKVLRPKFEFL----VNSMEKPVREVIEYPRYFSYSLEK 545


>AT1G79220.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:29799227-29800426 FORWARD
           LENGTH=399
          Length = 399

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 32/142 (22%)

Query: 188 LRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTK 247
           L   I Y ME+    E +R +I R P+   Y L+ KIKP +E++  LG  ++++  +L  
Sbjct: 149 LDERINYFMEILGSKEVLRRVIIRNPSLMLYDLDDKIKPAIEYYKGLGFSQQDLVAMLIS 208

Query: 248 RPQL--------------------------------CGISLSENLKPTMKFLESFGIDKK 275
           RP L                                 G+S  E ++  ++ LE FG  ++
Sbjct: 209 RPTLIPRTNFNNEKFEYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRNLEKFGFSEE 268

Query: 276 QWPKVIYRFPALLTYSLRREYR 297
           +   +  + P LL+ S+ +  R
Sbjct: 269 EIWHLYGKCPILLSLSVEKVQR 290