Miyakogusa Predicted Gene

Lj0g3v0163069.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163069.1 Non Chatacterized Hit- tr|B6TZL4|B6TZL4_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,33.88,4e-18,seg,NULL,CUFF.10160.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78170.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   106   1e-23
AT1G22250.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    86   2e-17
AT4G08910.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    69   3e-12

>AT1G78170.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:29414160-29414941 FORWARD
           LENGTH=221
          Length = 221

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 115/245 (46%), Gaps = 43/245 (17%)

Query: 1   MVSLHKALTESPKTQASI--AEFQALPKKRSWEDTLTKEFFKDHTDAEKSKPI-FDIELH 57
           MVS  +    S K   ++   EF    KK   ED      F +   +E  + I FD ELH
Sbjct: 1   MVSRQEGTLYSRKRDFTVCGEEFHNSFKKSKQEDQSQSTLFNERPKSESMRSITFDFELH 60

Query: 58  LKTPLPSDKWQQYLSIQSGQIHFCNTRMDMKTPDSQSQCGPQFKTLPEYEEASLGQ--MS 115
           L TPLPSD WQ              T+   +T D       + +  P+ +    GQ  MS
Sbjct: 61  LHTPLPSD-WQ--------------TKGYSRTSD-------EHRAYPK-DPVIFGQPKMS 97

Query: 116 LDLELNLTCESVKKIRXXXXXXXXXXXXN---SGSLLIESSNNKKDSCV---LTQTPSWL 169
           LDLELNL+  S    R            N   S S +   +N  K S +   L+++PSWL
Sbjct: 98  LDLELNLS-PSGSPSRTTTKKYESSSIHNETVSSSKIKVLTNTSKKSIIGTGLSRSPSWL 156

Query: 170 SSEGDDHN-------EMIAAVCMRCHLLVMLCKSSPSCPNCKFMHPPDQSPSQFLK-RRR 221
           + EG D N       EM+  VCM+CH+LVMLC S+P CPNCKFMHP D S ++  K    
Sbjct: 157 AFEGGDDNDVDHKGQEMVTTVCMKCHMLVMLCTSTPVCPNCKFMHPHDHSSTKLFKPSNL 216

Query: 222 FSLLC 226
             LLC
Sbjct: 217 LRLLC 221


>AT1G22250.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G78170.1); Has 64 Blast hits to 64 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:7858961-7859648 FORWARD
           LENGTH=200
          Length = 200

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 7/117 (5%)

Query: 117 DLELNLTCESVKKIRXXXXXXXXXXXXNSGSLLIESSNNKKDSCV-LTQTPSWLSSEGDD 175
           DL+LNL   S                   G+++I  S   +   + L+++PSWL+ EGDD
Sbjct: 84  DLDLNLNLYSSSSSSVKKTIMEKDECSKGGTVIISPSKKVRSGDIGLSRSPSWLAFEGDD 143

Query: 176 HN-----EMIAAVCMRCHLLVMLCKSSPSCPNCKFMHPPDQSPS-QFLKRRRFSLLC 226
            +     EMI  VCM+CH+LVMLCKS+  CPNCKFMH  D S + QF     F LLC
Sbjct: 144 DDNQKKQEMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSSTKQFQTLNLFKLLC 200


>AT4G08910.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G78170.1); Has 68 Blast hits to 68 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 4
           (source: NCBI BLink). | chr4:5712389-5713247 FORWARD
           LENGTH=212
          Length = 212

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 173 GDDHNEMIAAVCMRCHLLVMLCKSSPSCPNCKFMHPPDQSPSQFL 217
           G    EM+A VCM+CH+LVMLCK+SP+CPNCKFMH P+ +    L
Sbjct: 159 GRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMHSPEDTSLSLL 203