Miyakogusa Predicted Gene

Lj0g3v0160179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0160179.1 tr|D7BE34|D7BE34_MEISD Sugar isomerase (SIS)
OS=Meiothermus silvanus (strain ATCC 700542 / DSM 9946
,43.2,1e-18,seg,NULL; SIS domain,NULL; no description,NULL,CUFF.9939.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52190.1 | Symbols:  | Sugar isomerase (SIS) family protein |...   157   2e-39

>AT5G52190.1 | Symbols:  | Sugar isomerase (SIS) family protein |
           chr5:21201817-21202443 REVERSE LENGTH=208
          Length = 208

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 92/111 (82%), Gaps = 3/111 (2%)

Query: 3   SDSNTQEGVASMATQICTQIATIFSKPTHPYPSPLDLLVTELTTVASQ--NNRVFLYGVG 60
           ++   QE +A++++QIC QI+++F+KPT PYP PLDLLVTELT ++    N+R+FLYGVG
Sbjct: 2   ANEKAQE-MANLSSQICNQISSVFTKPTSPYPPPLDLLVTELTAISRNRNNSRIFLYGVG 60

Query: 61  REGLMLKAFCMRLAHLGLSAHLVFDMTTPPIAAGDLLIASAGPGGFAPVDA 111
           REGLMLKAF MRL H GL  HLVFDMTTPPI++ DLLIASAGPGGF+ VDA
Sbjct: 61  REGLMLKAFAMRLFHFGLPTHLVFDMTTPPISSSDLLIASAGPGGFSTVDA 111