Miyakogusa Predicted Gene

Lj0g3v0158249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158249.1 Non Chatacterized Hit- tr|D8RUG2|D8RUG2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,51.85,5e-19,seg,NULL,CUFF.9931.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11280.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   142   6e-35
AT1G80200.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    76   6e-15

>AT5G11280.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:3597321-3598347 FORWARD LENGTH=209
          Length = 209

 Score =  142 bits (358), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 80/92 (86%)

Query: 31  IAARIYFLLILFQIPLFRVTCRSGVCTNPLHVTSSQLIASEIFPVPVVKGLLYPGAVVHG 90
           +A+ +YF+LILFQIPLFRV CRSG+C++P+HVTSSQLI+SEIFPVP++K LLYPGAVV+G
Sbjct: 17  MASSVYFVLILFQIPLFRVPCRSGMCSSPIHVTSSQLISSEIFPVPMIKALLYPGAVVNG 76

Query: 91  LIHNMSVPSWGNLLETYNLTAVKNASAVTDLH 122
           L  NM+ P W N+L+ YNLT VK ASAVTDL 
Sbjct: 77  LAINMTFPKWENVLDIYNLTNVKEASAVTDLQ 108


>AT1G80200.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G11280.1); Has 49 Blast hits to
           49 proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:30162034-30162999 FORWARD LENGTH=234
          Length = 234

 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 30/122 (24%)

Query: 31  IAARIYFLLILFQIPLFRVT-----------------------------CRSGVCTNPLH 61
           IA+ ++ LLI+FQIPLFRVT                             CR+  C  PL 
Sbjct: 15  IASSLFSLLIVFQIPLFRVTLFNNAGALLDLDDRKKTDSILLGIEEIVACRNKSCETPLE 74

Query: 62  VTSSQLIASEIFPVPVVKGLLYPGAVVHGLIHNMSVPSWGNLLETYNLTAV-KNASAVTD 120
           V SS+LIA+++ P  +VK LLYPGA+   L     +PS+ +L + Y+   + + +S  TD
Sbjct: 75  VISSELIATDLIPSSLVKTLLYPGAITKSLFAGSKIPSYHHLFQFYSFDGMYRTSSFATD 134

Query: 121 LH 122
           +H
Sbjct: 135 IH 136