Miyakogusa Predicted Gene

Lj0g3v0146999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146999.1 CUFF.8981.1
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    56   6e-09

>AT1G49310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 9 plant structures; EXPRESSED
          DURING: LP.04 four leaves visible, petal
          differentiation and expansion stage; Has 11 Blast hits
          to 11 proteins in 6 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr1:18237997-18238325 REVERSE LENGTH=82
          Length = 82

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 5  FAVFAVF-SILLIANCSCATRDLG---DYWKNMMKGQAMPEAIKELVQDPQASYAGKDRF 60
            VF V  S LL  N S   R  G   +YWK MMK + +PE IKEL+ +P  +   ++RF
Sbjct: 8  LVVFIVLLSFLLFVNLSEG-RTGGVAEEYWKKMMKNEPLPEPIKELLNNPFRT--AQERF 64

Query: 61 IRDFDIRPNVILYH 74
          I++FD +  VI+YH
Sbjct: 65 IQNFDTKSVVIIYH 78