Miyakogusa Predicted Gene

Lj0g3v0141839.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0141839.1 tr|G7J6E7|G7J6E7_MEDTR Transcription factor HEC2
OS=Medicago truncatula GN=MTR_3g101810 PE=4 SV=1,51.98,0,seg,NULL;
coiled-coil,NULL; helix loop helix domain,Helix-loop-helix domain;
HLH, helix-loop-helix D,CUFF.8658.1
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-...   141   4e-34
AT5G67060.1 | Symbols: HEC1 | basic helix-loop-helix (bHLH) DNA-...   140   8e-34
AT5G09750.1 | Symbols: HEC3 | basic helix-loop-helix (bHLH) DNA-...   114   6e-26
AT3G21330.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   108   3e-24
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loo...   101   4e-22
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896...    66   2e-11
AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    60   9e-10
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr...    58   5e-09
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508...    57   1e-08
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503...    56   2e-08
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr...    55   6e-08
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032...    55   6e-08
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:247953...    54   8e-08
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348...    53   1e-07
AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    51   6e-07

>AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:18657423-18658118
           REVERSE LENGTH=231
          Length = 231

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 79/111 (71%)

Query: 110 SSMAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQ 169
           ++MAAMREMIFR+A MQP+ ID ESVKPPKR+NV+ISKDPQSVAA             LQ
Sbjct: 90  ANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQ 149

Query: 170 RMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRLTAANSCSRVGFPASYL 220
           R+VPGGTKMDTASMLDEAIHY+KFLKKQVQSL+     N           L
Sbjct: 150 RLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGAL 200


>AT5G67060.1 | Symbols: HEC1 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:26766276-26767001
           FORWARD LENGTH=241
          Length = 241

 Score =  140 bits (353), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 75/91 (82%)

Query: 112 MAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRM 171
           MAAMREMIFR+A MQP+ ID E+VKPPKRRNV+ISKDPQSVAA             LQR+
Sbjct: 95  MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 154

Query: 172 VPGGTKMDTASMLDEAIHYLKFLKKQVQSLQ 202
           VPGGTKMDTASMLDEAIHY+KFLKKQVQSL+
Sbjct: 155 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185


>AT5G09750.1 | Symbols: HEC3 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:3026401-3027075
           REVERSE LENGTH=224
          Length = 224

 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 112 MAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRM 171
           + AM+EM++++AAMQ V ID  +VK PKRRNV+IS DPQSVAA             LQR+
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 172 VPGGTKMDTASMLDEAIHYLKFLKKQVQSL 201
           VPGGTKMDTASMLDEAI Y+KFLK+Q++ L
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181


>AT3G21330.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:7507720-7508841 FORWARD
           LENGTH=373
          Length = 373

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 68/96 (70%)

Query: 109 SSSMAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXL 168
           + ++A M+EMI+R AA +PV    E V+ PKR+NVKIS DPQ+VAA             L
Sbjct: 239 AEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVL 298

Query: 169 QRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRL 204
           Q +VPGGTKMDTASMLDEA +YLKFL+ QV++L+ L
Sbjct: 299 QTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334


>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic
           helix-loop-helix (bHLH) DNA-binding superfamily protein
           | chr4:42601-43197 REVERSE LENGTH=198
          Length = 198

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 61/89 (68%)

Query: 114 AMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVP 173
           AM+EM + +A MQPV ID  +V  P RRNV+IS DPQ+V A             L+R+VP
Sbjct: 87  AMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146

Query: 174 GGTKMDTASMLDEAIHYLKFLKKQVQSLQ 202
           GG KMDTASMLDEAI Y KFLK+QV+ LQ
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ 175


>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
           FORWARD LENGTH=912
          Length = 912

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 140 RRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQ 199
           R    +S DPQSVAA             LQ MVPGG KMDT SMLDEAI Y+KFLK Q+ 
Sbjct: 38  RSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIW 97

Query: 200 SLQRL-------TAANSCSRVGFPASYLPTTKGY 226
             Q +          +SC+       + P   GY
Sbjct: 98  YHQNMLLFINDHETTSSCTYSPGAGEFGPKLFGY 131


>AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:17334261-17335234 FORWARD
           LENGTH=223
          Length = 223

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 124 AMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASM 183
           A+  V   S+S+K   + N  I+ DPQS+ A             LQ +VP GTK+D ++M
Sbjct: 117 ALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTM 176

Query: 184 LDEAIHYLKFLKKQVQSL 201
           L++A+HY+KFL+ Q++ L
Sbjct: 177 LEDAVHYVKFLQLQIKLL 194


>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
           chr1:9654753-9655806 FORWARD LENGTH=258
          Length = 258

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 134 SVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKF 193
           SVK   R     + DPQS+ A             LQ +VP GTK+D ++ML+EA+HY+KF
Sbjct: 162 SVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKF 221

Query: 194 LKKQVQSL 201
           L+ Q++ L
Sbjct: 222 LQLQIKLL 229


>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
           chr4:15079489-15081606 REVERSE LENGTH=310
          Length = 310

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 135 VKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFL 194
            KP  R     + DP S+A              LQ +VP G K D ASMLDE I Y+KFL
Sbjct: 126 TKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFL 185

Query: 195 KKQVQ--SLQRLTAANSCS 211
           + QV+  S+ RL  A S S
Sbjct: 186 QLQVKVLSMSRLGGAASAS 204


>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
           chr5:15036197-15037574 FORWARD LENGTH=307
          Length = 307

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 134 SVKPPKRRNVKIS-------KDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDE 186
           S KP    N KI        KDPQS+AA             LQ +VP GTK+D  +ML++
Sbjct: 189 SKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEK 248

Query: 187 AIHYLKFLKKQVQSL 201
           AI Y+KFL+ QV+ L
Sbjct: 249 AIGYVKFLQVQVKVL 263


>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
           chr4:16239566-16241052 REVERSE LENGTH=352
          Length = 352

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 148 DPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSL 201
           DPQS+ A             LQ +VP GTK+D ++ML+EA+HY+KFL+ Q++ L
Sbjct: 275 DPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 328


>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
           chr2:10319646-10322177 REVERSE LENGTH=350
          Length = 350

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 137 PPKRRNVKI------SKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHY 190
           PP+ R  KI      + DP S+A              LQ +VP G K D ASMLDE I Y
Sbjct: 131 PPQSR-TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDY 189

Query: 191 LKFLKKQVQ--SLQRLTAANSCS 211
           +KFL+ QV+  S+ RL  A S S
Sbjct: 190 VKFLQLQVKVLSMSRLGGAASVS 212


>AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 |
           chr1:24795326-24796598 FORWARD LENGTH=298
          Length = 298

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 147 KDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSL 201
           KDPQS+AA             LQ +VP GTK+D  +ML++AI Y+KFL+ QV+ L
Sbjct: 203 KDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVL 257


>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
           chr5:23483670-23484889 REVERSE LENGTH=297
          Length = 297

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 136 KPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLK 195
           KP  R     + DP S+A              LQ +VP   K D ASMLDE I Y++FL+
Sbjct: 96  KPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155

Query: 196 KQVQSLQRLTAANSCSRVGFPASYLPTTKGYQTQS 230
            QV+ L       S SR+G   S  P   G   ++
Sbjct: 156 LQVKVL-------SMSRLGGAGSVGPRLNGLSAEA 183


>AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:6321840-6323312 REVERSE
           LENGTH=328
          Length = 328

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 148 DPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSL 201
           DPQS+ A             LQ +VP GTK+D ++ML+EA+ Y+KFL+ Q++ L
Sbjct: 246 DPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLL 299