Miyakogusa Predicted Gene

Lj0g3v0128219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128219.1 tr|B9HNX6|B9HNX6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650065 PE=4
SV=1,56.19,2e-19,seg,NULL; PST2_GOSHI_P31336;,NULL,CUFF.7719.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51400.1 | Symbols:  | Photosystem II 5 kD protein | chr1:190...    64   2e-11
AT3G21055.1 | Symbols: PSBTN | photosystem II subunit T | chr3:7...    64   2e-11

>AT1G51400.1 | Symbols:  | Photosystem II 5 kD protein |
           chr1:19052172-19052492 REVERSE LENGTH=106
          Length = 106

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 7/107 (6%)

Query: 1   MASFTMTASILGSPVLTNRSA-VATQRR---FVVNAAATRAVEGDNKVNEEGSNNGRRNL 56
           MAS TMT+S L  P ++N  A +++  R    VV A+ +          +E S   RR+L
Sbjct: 1   MASMTMTSSFL--PTVSNLPANISSNSRRSLTVVKASGSENTTSLENKKQEQSMKMRRDL 58

Query: 57  MFXXXXXXX-XXXXXXXXXDEPKNGSPEAKKKYAPVCVTMPTARVCR 102
           +F                 DEPK G+  AKKKYAPVCVTMPTA++CR
Sbjct: 59  VFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICR 105


>AT3G21055.1 | Symbols: PSBTN | photosystem II subunit T |
           chr3:7376761-7377072 REVERSE LENGTH=103
          Length = 103

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 1   MASFTMTASILGSPVLTNRSAVATQRRFVVNAAATRAVEGDNKVNEEGSNNGRRNLMFXX 60
           MAS TMTA+    P +    +    RR  V  A+T       +V E+ S   RR+LMF  
Sbjct: 1   MASMTMTATFF--PAVAKVPSATGGRRLSVVRASTSDNTPSLEVKEQSSTTMRRDLMFTA 58

Query: 61  XXXX--XXXXXXXXXXDEPKNGSPEAKKKYAPVCVTMPTARVCR 102
                           +EPK G+  AKKKYA VCVTMPTA++CR
Sbjct: 59  AAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102