Miyakogusa Predicted Gene

Lj0g3v0127389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0127389.1 Non Chatacterized Hit- tr|D8T6S5|D8T6S5_SELML
Putative uncharacterized protein EID1-2
OS=Selaginella,32.12,8e-17,seg,NULL; F-box domain,F-box domain,
cyclin-like; no description,NULL; F-box-like,NULL,CUFF.7662.1
         (312 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02440.1 | Symbols: EID1 | F-box family protein | chr4:107255...   334   5e-92
AT5G15440.1 | Symbols: EDL1 | EID1-like 1 | chr5:5013158-5014131...    53   2e-07

>AT4G02440.1 | Symbols: EID1 | F-box family protein |
           chr4:1072555-1073565 FORWARD LENGTH=336
          Length = 336

 Score =  334 bits (856), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 175/337 (51%), Positives = 217/337 (64%), Gaps = 32/337 (9%)

Query: 3   LFSALTDDIVLNIFAKLEDDPRDWARLSCVCTRFSSLITDFCWKNKCSRSIP---PDLLS 59
           +FS + +D+V NIF KL+DDPR+WARL+CVCT+FSS++ + C K +C  +IP    DLL 
Sbjct: 5   VFSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLP 64

Query: 60  -----------------ATDPP---LSLHKLCLCCPGLLHAGLLFDTSDFGLDRDLGPDH 99
                            +  PP    SL+KL +CCPGL HAG+L + SDFGL+R+LGPD 
Sbjct: 65  LPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLERELGPDQ 124

Query: 100 H---HHXXXXXXXXXXXXXXXXXXXXXESSGWSLFDDLFYDTVYAAXXXXXXXXXXXXXX 156
           +                           +S WSL+DDL+ DT+ A               
Sbjct: 125 NLDPKPTTTDLALNDEEVSKPVGSGLETTSFWSLYDDLYTDTIPAPPPEDSIDDQEEEIE 184

Query: 157 XXXXXVVRQGVVAEARETKKRKVCGARGSHLATGTWNLSREQGSKLLARQFRDDCLYVCD 216
                 +R G     R  K+RK+C + GSHLA+G WNLSREQG+KLLA +FR DCLY+C+
Sbjct: 185 TSE---IRPGRDLPVR--KRRKICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICN 239

Query: 217 WPGCVHSEEKRKYMLFRGVFKNFKRTRVWRTINDGNRRKLD-LPCAFCACKHTWDLHSAF 275
           WPGC+H EEKR YMLFRGVFK+FKR+RVWRTINDGNR K   L CAFC C  TWDLHS+F
Sbjct: 240 WPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSF 299

Query: 276 CLRRGFGFHDDGEPVVRAFVCDNGHVSGAWTDVPMYA 312
           CLRR FGFHDDGEPVVRA+VC+NGHVSGAWT +P+Y 
Sbjct: 300 CLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 336


>AT5G15440.1 | Symbols: EDL1 | EID1-like 1 | chr5:5013158-5014131
           FORWARD LENGTH=293
          Length = 293

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 194 LSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFKRTRVWRT-INDGN 252
            SR  G  LL  Q R D LYVCD    +   E+    LFRG+FK+F  ++V +  IN   
Sbjct: 122 FSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAV 181

Query: 253 RRKLDLPCAFCACKHTWDLHSAFCLRRGFGFHDDG-EPVVRAFVCDNGHVSGAWTDVPM 310
                  C +C  K  W +  A  + +      +  E  +  FVC NGH+ G  T  P+
Sbjct: 182 PFHPSEVCPYCKAK-LWSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPL 239