Miyakogusa Predicted Gene
- Lj0g3v0110929.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0110929.1 Non Chatacterized Hit- tr|I1ND38|I1ND38_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,30.58,0.000000000000001,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat,CUFF.6407.1
(255 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 182 2e-46
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su... 61 8e-10
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 5e-09
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 6e-08
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 6e-08
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 1e-07
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 2e-07
AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381... 52 3e-07
AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 5e-07
AT1G53330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 1e-06
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 1e-06
AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su... 50 2e-06
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 2e-06
AT1G74580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 2e-06
AT1G63630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 4e-06
AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 49 4e-06
AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 4e-06
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232... 49 5e-06
AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 48 7e-06
AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 8e-06
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 9e-06
AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 9e-06
AT1G79540.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 9e-06
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 9e-06
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 140/213 (65%), Gaps = 6/213 (2%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPT-LTFD 92
KA L +E+ G + V Y VLI+GL+K++RTREAK++LL L Y S P+ +T+
Sbjct: 538 KALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE---ESVPSDVTYH 594
Query: 93 TLIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCK 152
TLIENCSN EF S+V L+KGF ++ + EA V +ML N+KPDG YN +I HCR
Sbjct: 595 TLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAG 654
Query: 153 NVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHK 212
++ KAY +Y EMV+ GF H +V+AL+K L+ + NE++ VI + LRSC L+++E K
Sbjct: 655 DIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAK 714
Query: 213 LLNEIGVRKGEFKEDALFNVLAEIAMDGLLLNG 245
+L EI R+G D + +VLAE+A DG L NG
Sbjct: 715 VLVEINHREGNM--DVVLDVLAEMAKDGFLPNG 745
>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:19900303-19902567 FORWARD
LENGTH=754
Length = 754
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
+A +L ++ G R + Y+ LI G K +TREA+++ + H S ++T++T
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH--GVSRNSVTYNT 510
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
LI+ L K R+ D AA +++ M+ KPD YN L+ CR +
Sbjct: 511 LIDG-----------LCKSRRVED----AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD 555
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTL 183
+ KA D+ M G P + + LI L
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTLISGL 585
>AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23208247-23209893 REVERSE
LENGTH=548
Length = 548
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 104 MSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKAYDMYME 163
+++ LV GF R+ ++A S+++ M++ YKPD YN +I C+ K V+ A+D + E
Sbjct: 156 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215
Query: 164 MVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKLLNEIGVRKGE 223
+ + G P++ + AL+ L R+++ + ++ + ++ + + L + V+ G+
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Query: 224 FKE-DALFNVLAEIAMD 239
E LF + +++D
Sbjct: 276 VLEAKELFEEMVRMSID 292
>AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23388884-23390728 REVERSE
LENGTH=614
Length = 614
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
+A L+D++ G +V + L+ GL + + EA ++ ++ C T
Sbjct: 153 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG--- 209
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
++ G R + A ++LN M +G + D +Y+ +I C+ ++
Sbjct: 210 --------------AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRH 255
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTL-RSCNLNDSELHK 212
VD A +++ EM G P +F+ +LI L R+++ S ++ + L R N N +
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315
Query: 213 LLNEIGVRKGEFKEDALFNVLAEIAMD 239
L++ + + LF+ + + ++D
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSID 342
>AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD
LENGTH=566
Length = 566
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
KA +L +L G V Y++L+SG +K T A KM+ + S +T+
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPS--KVTYTI 413
Query: 94 LIENCSNNEFM--------SLVEL------------VKGFRIRDLENEAASVLNTMLQGN 133
LI+ + ++ M S+ EL + GF I+ NEA+ + +M++ N
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 134 YKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMS 193
+P+ +YN +I+ +C+ + +A + EM + AP++ S +I+ L R+ E
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533
Query: 194 WVIENTLRS 202
++E + S
Sbjct: 534 RLVEKMIDS 542
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=590
Length = 590
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
+A L+D++ G +V + L+ GL + + EA ++ ++ C
Sbjct: 163 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQP--------- 213
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
+ ++ ++ G R + A ++LN M +G + D +YN +I C+ K+
Sbjct: 214 --------DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKH 265
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLN-DSELHK 212
+D A+D++ +M G P +F+ LI L R+++ S ++ + L N+N D
Sbjct: 266 MDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEK-NINPDLVFFN 324
Query: 213 LLNEIGVRKGEFKE 226
L + V++G+ E
Sbjct: 325 ALIDAFVKEGKLVE 338
>AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412854-23414746 FORWARD
LENGTH=630
Length = 630
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 35 AKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTL 94
A +L+ ++ G S ++ LI GL + R EA ++ ++ C T
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGI--- 226
Query: 95 IENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNV 154
+V G R + A S+L M QG +P +YN +I C KNV
Sbjct: 227 --------------VVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNV 272
Query: 155 DKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTL-RSCNLNDSELHKL 213
+ A +++ EM G P++ + +LI+ L R+++ S ++ + + R N N L
Sbjct: 273 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332
Query: 214 LNEIGVRKGEFKE-DALFNVLAEIAMD 239
++ V++G+ E + L++ + + ++D
Sbjct: 333 IDAF-VKEGKLVEAEKLYDEMIKRSID 358
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 52 VIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTLIENCSNNEFMSLVELVK 111
V + LI K+ + EA+K+ +D +I+ + + + L+
Sbjct: 327 VTFSALIDAFVKEGKLVEAEKL-----------------YDEMIKRSIDPDIFTYSSLIN 369
Query: 112 GFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAP 171
GF + D +EA + M+ + P+ YN LI C+ K VD+ +++ EM Q G
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429
Query: 172 HMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKLL 214
+ + LI + R + V + + L D + +L
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSIL 472
>AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:25723247-25725439 REVERSE
LENGTH=730
Length = 730
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 35 AKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTL 94
A +LL ++T G V SVIY LI L K R EA ++L + C T
Sbjct: 236 ALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFN---- 291
Query: 95 IENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNV 154
+++ G D NEAA ++N ML + PD Y +L+ C+ V
Sbjct: 292 -------------DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRV 338
Query: 155 DKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRS 202
D A D++ + + P + LI R ++ V+ + + S
Sbjct: 339 DAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 52 VIYDVLISGLDKKARTREAKKMLL----------------SLIYHLCTTSWPTLTFDTLI 95
VI++ LI G R +AK +L SLIY L + L
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLH 413
Query: 96 E----NCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRC 151
+ C N + S LV GF +EA +VLN M KP+ +N LI C+
Sbjct: 414 DMRNKGCKPNVY-SYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472
Query: 152 KNVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELH 211
+ +A +++ EM + G P +++ +LI L W++ + + + ++ +
Sbjct: 473 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532
Query: 212 KLLNEIGVRKGEFKE 226
L +R+GE KE
Sbjct: 533 NTLINAFLRRGEIKE 547
>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
chr2:16381647-16384250 FORWARD LENGTH=867
Length = 867
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 120 NEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLAL 179
+ A S L M Q +P+ YN +++ HCR KN+D A ++ EM++ G P+ F+ L
Sbjct: 466 DAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSIL 525
Query: 180 IKTLYYGRRYNEMSWVIENTLRSCNLNDSEL 210
I ++ + + +W + N + + N +E+
Sbjct: 526 IDG-FFKNKDEQNAWDVINQMNASNFEANEV 555
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 39/223 (17%)
Query: 52 VIYDVLISGLDKKARTREAKKMLLSLI----YHLCTTSWPTL---------------TFD 92
VIY+ +I+GL K +T +AK+ML +LI Y + TS+ ++ T+
Sbjct: 555 VIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYR 614
Query: 93 TLIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCK 152
+ EN + ++ L+ GF + + A + + M K D Y LI C+
Sbjct: 615 EMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKN 674
Query: 153 NVDKAYDMYMEMVQCGFAPHMFSVLALIKTL-----------YYGRRYNE--------MS 193
++ AY ++ E+ + G P++ +LI Y + N+ +
Sbjct: 675 DMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYT 734
Query: 194 WVIENTLRSCNLN-DSELHKLLNEIGVRKGEFKEDALFNVLAE 235
+I+ L+ N+N S+L+ L ++G+ E L N L++
Sbjct: 735 TMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSK 777
>AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26201012-26203759 REVERSE
LENGTH=915
Length = 915
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
KA+ LL ++ G + + Y+ LI+G K+ +A ++ + S T T++
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE--LMESRKLSPNTRTYN- 432
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
EL+KG+ ++ ++A VLN ML+ PD YN LI CR N
Sbjct: 433 --------------ELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKL 213
D AY + M G P ++ ++I +L +R E +C+L DS K
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEE----------ACDLFDSLEQKG 527
Query: 214 LN 215
+N
Sbjct: 528 VN 529
>AT1G53330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:19896027-19897442 FORWARD
LENGTH=471
Length = 471
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 35 AKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKM----------------LLSLI 78
A L DE+ V + LI GL K +R +EA KM SLI
Sbjct: 171 ALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLI 230
Query: 79 YHLCTTSWPTLTF---DTLIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYK 135
LC + F D E + L+ NE + +L M + K
Sbjct: 231 KALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCK 290
Query: 136 PDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWV 195
PD YN LI C + + A + EMV+ G P + S ++ + +++ E +++
Sbjct: 291 PDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYL 350
Query: 196 IENTLRSCNLNDSELHKLLNEIGVRKG-EFKEDALFNVLAEIAMDGLLLNGGK 247
E+ R D+ ++++ + G+ +G +F+E A + +D +L G K
Sbjct: 351 FEDMPRRGCSPDTLSYRIVFD-GLCEGLQFEE-------AAVILDEMLFKGYK 395
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 21/184 (11%)
Query: 21 HLWAQ--KAACWM-RLKAKTLLDELTHFGDVR-QSVIYDVLISGLDKKARTREAKKMLLS 76
H++A KA C + L L + + G ++ + IY LIS L K R+ E +L
Sbjct: 224 HIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEE 283
Query: 77 LIYHLCTTSWPTLTFDTLIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKP 136
+ C T+T++ LI GF + + A VL+ M++ KP
Sbjct: 284 MSEKGCKPD--TVTYNVLI---------------NGFCVENDSESANRVLDEMVEKGLKP 326
Query: 137 DGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVI 196
D YN ++ R K ++A ++ +M + G +P S + L G ++ E + ++
Sbjct: 327 DVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVIL 386
Query: 197 ENTL 200
+ L
Sbjct: 387 DEML 390
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 19/203 (9%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
KA+ +L E+ G V ++VL++G + +K+L +W
Sbjct: 544 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL----------NW------M 587
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
L + + N + LVK + IR+ A ++ M PDG Y L+ HC+ +N
Sbjct: 588 LAKGIAPNA-TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN 646
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKL 213
+ +A+ ++ EM GF+ + + LIK +++ E V + R D E+
Sbjct: 647 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 706
Query: 214 LNEIGVRKGEFKEDALFNVLAEI 236
++ KG+ + D + + + EI
Sbjct: 707 FSDTKY-KGK-RPDTIVDPIDEI 727
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 19/203 (9%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
KA+ +L E+ G V ++VL++G + +K+L +W
Sbjct: 544 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL----------NW------M 587
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
L + + N + LVK + IR+ A ++ M PDG Y L+ HC+ +N
Sbjct: 588 LAKGIAPNA-TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN 646
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKL 213
+ +A+ ++ EM GF+ + + LIK +++ E V + R D E+
Sbjct: 647 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 706
Query: 214 LNEIGVRKGEFKEDALFNVLAEI 236
++ KG+ + D + + + EI
Sbjct: 707 FSDTKY-KGK-RPDTIVDPIDEI 727
>AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23507320-23509053 FORWARD
LENGTH=577
Length = 577
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 52 VIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTLIENCSNNEFMSLVELVK 111
V ++ LI K+ + EA+K+ +D +I+ + + + L+
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKL-----------------YDEMIKRSIDPDIFTYSSLIN 373
Query: 112 GFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAP 171
GF + D +EA + M+ + P+ YN LI C+ K +D+ +++ EM Q G
Sbjct: 374 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433
Query: 172 HMFSVLALIKTLYYGR 187
+ + LI + R
Sbjct: 434 NTVTYTTLIHGFFQAR 449
>AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23301576-23303162 FORWARD LENGTH=528
Length = 528
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 35 AKTLLDELTHFGDVRQSVI-YDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLT--- 90
A L E+ + G VR +VI Y LIS L R +A ++L +I + T +
Sbjct: 272 ALNLFTEMENKG-VRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALI 330
Query: 91 ---------------FDTLIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYK 135
++ +I+ + + L+ GF + D EA +L M++ +
Sbjct: 331 DAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL 390
Query: 136 PDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGR 187
P+ YN LI C+ K VDK +++ EM Q G + + LI + R
Sbjct: 391 PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442
>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28133933-28135381 FORWARD
LENGTH=453
Length = 453
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
KA +L E+ G Y+ ++ G + + R A + L + C T T
Sbjct: 213 KALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYT--- 269
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
+V GF + A +V + M++ P A YN +I C+ N
Sbjct: 270 --------------TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDN 315
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYN 190
V+ A M+ EMV+ G+ P++ + LI+ L++ ++
Sbjct: 316 VENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFS 352
>AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478860-16480443 REVERSE
LENGTH=527
Length = 527
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 35 AKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTL 94
A +L D++ ++G V+Y L++GL R R+A +L + +TF+ L
Sbjct: 196 ALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKR--KIKPDVITFNAL 253
Query: 95 IENCSN-----------NEFMSL---------VELVKGFRIRDLENEAASVLNTMLQGNY 134
I+ NE + + L+ GF + +EA + M
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGC 313
Query: 135 KPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALIK 181
PD Y LI C+CK VD A ++ EM Q G + + LI+
Sbjct: 314 FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQ 360
>AT1G74580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28020777-28023068 FORWARD
LENGTH=763
Length = 763
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 31 MRLKAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTL- 89
M L+A L +E++ G + + +++L++GL K +A ++ +I +P +
Sbjct: 406 MILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI---SKGYFPDIF 462
Query: 90 TFDTLIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHC 149
TF+ LI S +EN A +L+ ML PD YN L+ C
Sbjct: 463 TFNILIHGYSTQ--------------LKMEN-ALEILDVMLDNGVDPDVYTYNSLLNGLC 507
Query: 150 RCKNVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIE 197
+ + + Y MV+ G AP++F+ L+++L R+ +E ++E
Sbjct: 508 KTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLE 555
>AT1G63630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23587613-23588220 FORWARD
LENGTH=152
Length = 152
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 51 SVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTLIENCSNNEFMSLVELV 110
++ Y+ +I G K+ R +AK+ML S+ C S +TF TLI N + +
Sbjct: 10 TITYNSMIDGFCKQDRVDDAKRMLDSMASKGC--SPDVVTFSTLI-----NGYCKAKRVD 62
Query: 111 KGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFA 170
G I + V NT+ Y LI C+ ++D A D+ EM+ CG A
Sbjct: 63 NGMEIFCEMHRRGIVANTV----------TYTTLIHGFCQVGDLDAAQDLLNEMISCGVA 112
Query: 171 PHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKLLNE 216
P + ++ L + + ++E +L SE H L +E
Sbjct: 113 PDYITFHCMLAGLCSKKELRKAFAILE------DLQKSEDHHLEDE 152
>AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2056999-2060242 REVERSE
LENGTH=997
Length = 997
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
+A+ LLD ++ G ++YD LI GL K + EA+++ + H +P +
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEH----GFPATLY-- 710
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
+ SL++ + +DL A+ VL+ ML+ + P+ +Y +I C+
Sbjct: 711 --------TYSSLIDRYFKVKRQDL---ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 759
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALI 180
D+AY + M + G P++ + A+I
Sbjct: 760 TDEAYKLMQMMEEKGCQPNVVTYTAMI 786
>AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23587298-23588220 FORWARD
LENGTH=257
Length = 257
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
+A+ + E+ + ++ Y+ +I G K+ R +AK+ML S+ C S +TF T
Sbjct: 98 EAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGC--SPDVVTFST 155
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
LI N + + G I + V NT+ Y LI C+ +
Sbjct: 156 LI-----NGYCKAKRVDNGMEIFCEMHRRGIVANTV----------TYTTLIHGFCQVGD 200
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKL 213
+D A D+ EM+ CG AP + ++ L + + ++E +L SE H L
Sbjct: 201 LDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILE------DLQKSEDHHL 254
Query: 214 LNE 216
+E
Sbjct: 255 EDE 257
>AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24900186-24903110 REVERSE
LENGTH=974
Length = 974
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
KAK L D + G + Q+ Y LI G ++ R+ ++L+ + S T+ T
Sbjct: 365 KAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVIS--PYTYGT 422
Query: 94 LIEN-CSNNEF-------------------MSLVELVKGFRIRDLENEAASVLNTMLQGN 133
+++ CS+ + + L+K F +A VL M +
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Query: 134 YKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALI 180
PD YN LI+ + K +D+A +EMV+ G P+ F+ A I
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
>AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:23227574-23229031 FORWARD
LENGTH=485
Length = 485
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 18/172 (10%)
Query: 35 AKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLT--FD 92
A L D + G +V Y+ L++GL R +A +++ ++ + T T D
Sbjct: 193 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 252
Query: 93 TLIENCSNNEFMSLVE----------------LVKGFRIRDLENEAASVLNTMLQGNYKP 136
++ +E M L E L+ G + +EA +L+ M+ P
Sbjct: 253 VFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312
Query: 137 DGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRR 188
D YN LI C+ K VD+ ++ EM Q G + +I+ + R
Sbjct: 313 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
>AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:6328519-6329970 REVERSE
LENGTH=483
Length = 483
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 18/170 (10%)
Query: 32 RLKAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLI------------- 78
+L+A + L G V+Y +I G +K A+K+ +I
Sbjct: 299 QLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNV 358
Query: 79 -----YHLCTTSWPTLTFDTLIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGN 133
+ S ++ ++ N +S ++KGF +EA + M +
Sbjct: 359 MIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETG 418
Query: 134 YKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPHMFSVLALIKTL 183
P+ YN LI C+ V+K +Y E+ G P + AL++ L
Sbjct: 419 VTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNL 468
>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
chr1:23204773-23206665 REVERSE LENGTH=630
Length = 630
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 96/208 (46%), Gaps = 20/208 (9%)
Query: 34 KAKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDT 93
+A L+D++ G +V ++ LI GL + EA ++ ++ C T
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV-- 226
Query: 94 LIENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKN 153
+V G R + A ++LN M QG +P +YN +I C+ K+
Sbjct: 227 ---------------VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 271
Query: 154 VDKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTL-RSCNLNDSELHK 212
+D A +++ EM G P++ + +LI L R+++ S ++ + + R N +
Sbjct: 272 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331
Query: 213 LLNEIGVRKGEFKE-DALFNVLAEIAMD 239
L++ V++G+ E + L++ + + ++D
Sbjct: 332 LIDAF-VKEGKLVEAEKLYDEMVKRSID 358
>AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Pentatricopeptide repeat (PPR) superfamily
protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
12380 proteins in 263 species: Archae - 4; Bacteria -
27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
- 0; Other Eukaryotes - 935 (source: NCBI BLink). |
chr4:575843-577243 REVERSE LENGTH=466
Length = 466
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 33/203 (16%)
Query: 35 AKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTL 94
A LLD++ + G V + Y L++ L +K + REA K+L + C
Sbjct: 244 AMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGC------------ 291
Query: 95 IENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNV 154
N + + ++ GF D +A VL+ ML P+ Y LI C
Sbjct: 292 -----NPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMF 346
Query: 155 DKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTLRS------------ 202
D+ EM+ GF+PH L+K + E V+E +++
Sbjct: 347 DEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMV 406
Query: 203 ----CNLNDSELHKLLNEIGVRK 221
CN ++SE KL E V++
Sbjct: 407 IPLICNEDESEKIKLFLEDAVKE 429
>AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:2014440-2015942 REVERSE
LENGTH=500
Length = 500
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 38 LLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTLIEN 97
+L ++ G + + LI K+ + EAKK ++ +I+
Sbjct: 241 ILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKK-----------------QYNEMIQR 283
Query: 98 CSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKA 157
N ++ L+ G I L +EA VLN ++ + P+ YN LI +C+ K VD
Sbjct: 284 SVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDG 343
Query: 158 YDMYMEMVQCGFAPHMFSVLALIKTLYYG 186
+ M + G F+ TLY G
Sbjct: 344 MKILCVMSRDGVDGDTFTY----NTLYQG 368
>AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308423 FORWARD
LENGTH=629
Length = 629
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 52 VIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTLIENCSNNEFMSLVELVK 111
V + LI K+ + EA+K+ +D +I+ + + + L+
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKL-----------------YDEMIKRSIDPDIFTYSSLIN 368
Query: 112 GFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAP 171
GF + D +EA + M+ + P+ YN LI C+ K V++ +++ EM Q G
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 172 HMFSVLALIKTLY 184
+ + LI+ L+
Sbjct: 429 NTVTYNTLIQGLF 441
>AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:7029701-7031314 FORWARD
LENGTH=537
Length = 537
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 40/232 (17%)
Query: 39 LDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTLIENC 98
+ + +G V + + ++IS L +K R EA+ FD+L +
Sbjct: 209 FNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSF-----------------FDSLKDRF 251
Query: 99 SNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNVDKAY 158
+ + LV+G+ +EA V M +P+ Y+ +I CRC + +A+
Sbjct: 252 EP-DVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAH 310
Query: 159 DMYMEMVQCGFAPHMFSVLALIKTLYYGRR-------YNEM------------SWVIENT 199
D++ +M+ G AP+ + L++ R YN+M +++IE
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAH 370
Query: 200 LRSCNLNDSELHKLLNEIGVRKGEFKEDALFNVLAEIAMDGLLLNGGKCSYA 251
R NL ++ K+LN + +K E + FN + +NG Y+
Sbjct: 371 CRDENLENAV--KVLNTMIKKKCEVNA-STFNTIFRYIEKKRDVNGAHRMYS 419
>AT1G79540.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29920334-29922676 REVERSE
LENGTH=780
Length = 780
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 21/189 (11%)
Query: 54 YDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTLIENCSNNEFMSLVELVKGF 113
+ +L+ GL KK RT +A+KM FD + + ++ L+ G
Sbjct: 201 FGILMDGLYKKGRTSDAQKM-----------------FDDMTGRGISPNRVTYTILISGL 243
Query: 114 RIRDLENEAASVLNTM-LQGNYKPDGAVYNFLIVEHCRCKNVDKAYDMYMEMVQCGFAPH 172
R ++A + M GNY PD +N L+ C+ + +A+++ + GF
Sbjct: 244 CQRGSADDARKLFYEMQTSGNY-PDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLG 302
Query: 173 MFSVLALIKTLYYGRRYNEMSWVIENTLRSCNLNDSELHKLLNEIGVRKGEFKEDALFNV 232
+ +LI L+ RRY + + N L+ D L+ +L + G+ K EDAL +
Sbjct: 303 LRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQ-GLSKAGKIEDAL-KL 360
Query: 233 LAEIAMDGL 241
L+ + G+
Sbjct: 361 LSSMPSKGI 369
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE LENGTH=634
Length = 634
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 20/207 (9%)
Query: 35 AKTLLDELTHFGDVRQSVIYDVLISGLDKKARTREAKKMLLSLIYHLCTTSWPTLTFDTL 94
A L+D++ G ++ + LI GL + EA ++ ++ C + T
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV--- 230
Query: 95 IENCSNNEFMSLVELVKGFRIRDLENEAASVLNTMLQGNYKPDGAVYNFLIVEHCRCKNV 154
+V G R + A ++LN M + D ++N +I C+ ++V
Sbjct: 231 --------------VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV 276
Query: 155 DKAYDMYMEMVQCGFAPHMFSVLALIKTLYYGRRYNEMSWVIENTL-RSCNLNDSELHKL 213
D A +++ EM G P++ + +LI L R+++ S ++ + + + N N + L
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Query: 214 LNEIGVRKGEFKE-DALFNVLAEIAMD 239
++ V++G+F E + L++ + + ++D
Sbjct: 337 IDAF-VKEGKFVEAEKLYDDMIKRSID 362