Miyakogusa Predicted Gene

Lj0g3v0108459.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0108459.2 Non Chatacterized Hit- tr|H2ZU33|H2ZU33_LATCH
Uncharacterized protein OS=Latimeria chalumnae
GN=FBXO,25.19,2e-17,ApaG-like,ApaG domain; F-box domain,F-box domain,
cyclin-like; FBOX,F-box domain, cyclin-like; APAG,,CUFF.6249.2
         (360 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06110.1 | Symbols: SKIP16 | SKP1/ASK-interacting protein 16 ...   266   1e-71

>AT1G06110.1 | Symbols: SKIP16 | SKP1/ASK-interacting protein 16 |
           chr1:1853237-1854938 REVERSE LENGTH=436
          Length = 436

 Score =  266 bits (681), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 151/185 (81%)

Query: 176 QQDAMLLWFEEHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTAITNGVQVRASALFVP 235
           QQDAMLLW EEHGRRLQ G I + ++ N +SI+LFPE PPLCS ++TNGVQVRAS++F+P
Sbjct: 252 QQDAMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIP 311

Query: 236 ELSDLQDDLEKYLFAYSIRMSLHPEGCIINGMSFSSCQLHWRHWIIRANDIVVSDVNGEA 295
           E+S+L+D    Y +AYSIRMSL PEGCI+NG   SSCQL+WRHW+IRA++ V+ +VNGEA
Sbjct: 312 EISNLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEA 371

Query: 296 VIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFTFVPGRLANPKGDSFLATVDRFPIQL 355
           VIG +PLL+ G EEFVY+SC+  PT++GS++GSFTFVPG L +PKG  F   V  FP++L
Sbjct: 372 VIGKYPLLQAGEEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLEL 431

Query: 356 PDYIF 360
           PDYIF
Sbjct: 432 PDYIF 436



 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 137/196 (69%), Gaps = 6/196 (3%)

Query: 2   MGLETVVDLAIHDVLRRLSPEDIARVACVSKKLRSLAFDDDSLWLTICISELDLHQPLDH 61
           MGLE   DL +H VL ++ PE+ ARVACVSK+L+ ++  ++SLW   C ++L++  PLD 
Sbjct: 1   MGLEDAGDLVLHIVLSKIGPENTARVACVSKRLK-VSASEESLWSIFCSNDLNISTPLDP 59

Query: 62  LGNPLPSFKATYQAWREAFAMYPWSLVKRVKQCWDKLKTWLVNNFPEAEATLCKGASEAE 121
            G+P PSFK  YQ WRE+F MYPW+LVKRV+ CWD LK WL  NFPEA+ATL KG +E +
Sbjct: 60  HGDPAPSFKRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDD 119

Query: 122 ILELENVLEVKLPLPTRILYRFHNGQEIANGDLESDTFGSSLGLIGGYSFYSHLQQDAML 181
           + E E  L+VKLPLPTR+LYRF +GQE+++     +    SLGLIGGYS YSH   +  L
Sbjct: 120 LQEFETSLKVKLPLPTRLLYRFVDGQELSS----PNGLDGSLGLIGGYSAYSH-DVNVYL 174

Query: 182 LWFEEHGRRLQQGFIK 197
           L  +E  R  ++ F++
Sbjct: 175 LPLKEVMRETKESFMR 190