Miyakogusa Predicted Gene
- Lj0g3v0093719.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0093719.2 Non Chatacterized Hit- tr|I3SSP1|I3SSP1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.02,0,SHIKIMTKNASE,Shikimate kinase; P-loop containing
nucleoside triphosphate hydrolases,NULL; no descrip,CUFF.5301.2
(253 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21940.4 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93... 269 1e-72
AT2G21940.5 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93... 268 3e-72
AT2G21940.2 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93... 268 3e-72
AT2G21940.1 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93... 268 3e-72
AT2G21940.3 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93... 268 3e-72
AT4G39540.2 | Symbols: SK2, ATSK2 | shikimate kinase 2 | chr4:18... 254 3e-68
AT4G39540.1 | Symbols: SK2, ATSK2 | shikimate kinase 2 | chr4:18... 254 3e-68
AT4G39540.3 | Symbols: SK2 | shikimate kinase 2 | chr4:18378561-... 246 1e-65
AT3G26900.3 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | ... 100 9e-22
AT3G26900.2 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | ... 100 9e-22
AT3G26900.1 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | ... 100 9e-22
>AT2G21940.4 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
chr2:9351106-9352881 FORWARD LENGTH=304
Length = 304
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/201 (65%), Positives = 165/201 (82%), Gaps = 2/201 (0%)
Query: 53 RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
+RR S V+CS +N + LE+GS P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57 QRRAVSPAVSCSDNNSSGALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 114
Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF +GE+FFR KET+AL KLS +
Sbjct: 115 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 174
Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
+ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+
Sbjct: 175 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 234
Query: 233 ALMRLSALFEERGEAYANASA 253
A RLSA+++ERGEAY NA+A
Sbjct: 235 AFKRLSAIWDERGEAYTNANA 255
>AT2G21940.5 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
chr2:9351106-9352881 FORWARD LENGTH=303
Length = 303
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)
Query: 53 RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
+RR S V+CS DN ++ LE+GS P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57 QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113
Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF +GE+FFR KET+AL KLS +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173
Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
+ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233
Query: 233 ALMRLSALFEERGEAYANASA 253
A RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254
>AT2G21940.2 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
chr2:9351106-9352881 FORWARD LENGTH=303
Length = 303
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)
Query: 53 RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
+RR S V+CS DN ++ LE+GS P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57 QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113
Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF +GE+FFR KET+AL KLS +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173
Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
+ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233
Query: 233 ALMRLSALFEERGEAYANASA 253
A RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254
>AT2G21940.1 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
chr2:9351106-9352881 FORWARD LENGTH=303
Length = 303
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)
Query: 53 RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
+RR S V+CS DN ++ LE+GS P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57 QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113
Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF +GE+FFR KET+AL KLS +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173
Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
+ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233
Query: 233 ALMRLSALFEERGEAYANASA 253
A RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254
>AT2G21940.3 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
chr2:9351106-9352622 FORWARD LENGTH=276
Length = 276
Score = 268 bits (684), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)
Query: 53 RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
+RR S V+CS DN ++ LE+GS P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57 QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113
Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF +GE+FFR KET+AL KLS +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173
Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
+ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233
Query: 233 ALMRLSALFEERGEAYANASA 253
A RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254
>AT4G39540.2 | Symbols: SK2, ATSK2 | shikimate kinase 2 |
chr4:18378561-18380253 FORWARD LENGTH=300
Length = 300
Score = 254 bits (649), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 175/247 (70%), Gaps = 12/247 (4%)
Query: 19 IGRIPTCSFNLSRDQPLKLRGSIYSAKLHSSKIHRRRIASMEVACSYDNL--------PA 70
+ R S+N R+ K RGS+ + R R+ ++ + D+ +
Sbjct: 6 VQRFQYSSWNDLRNFEGKPRGSLRYNTQRIKEDKRFRVVALTLDKRRDHRLRSVSDKNSS 65
Query: 71 STLESGSR-RAPLDDEL-ILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYE 128
+ LE+GS +P D+E ILK +++E++PYLNGR +YLVGMMGSGKTTVGKIM++ LGY
Sbjct: 66 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 125
Query: 129 FCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMM-HRHIVSTGGGAVMRPI 187
F D D L+E+ + G SVA+IF +GES FR+KETEAL KLS+M H+ +VSTGGGAV+RPI
Sbjct: 126 FFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPI 185
Query: 188 NWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLH-YEAGDAYTRALMRLSALFEERGE 246
NWKYMHKGIS+WLDVP+EALA RIAAVGT SRPLLH E+GD YT AL RLS +++ RGE
Sbjct: 186 NWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGE 245
Query: 247 AYANASA 253
AY ASA
Sbjct: 246 AYTKASA 252
>AT4G39540.1 | Symbols: SK2, ATSK2 | shikimate kinase 2 |
chr4:18378561-18380253 FORWARD LENGTH=300
Length = 300
Score = 254 bits (649), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 175/247 (70%), Gaps = 12/247 (4%)
Query: 19 IGRIPTCSFNLSRDQPLKLRGSIYSAKLHSSKIHRRRIASMEVACSYDNL--------PA 70
+ R S+N R+ K RGS+ + R R+ ++ + D+ +
Sbjct: 6 VQRFQYSSWNDLRNFEGKPRGSLRYNTQRIKEDKRFRVVALTLDKRRDHRLRSVSDKNSS 65
Query: 71 STLESGSR-RAPLDDEL-ILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYE 128
+ LE+GS +P D+E ILK +++E++PYLNGR +YLVGMMGSGKTTVGKIM++ LGY
Sbjct: 66 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 125
Query: 129 FCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMM-HRHIVSTGGGAVMRPI 187
F D D L+E+ + G SVA+IF +GES FR+KETEAL KLS+M H+ +VSTGGGAV+RPI
Sbjct: 126 FFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPI 185
Query: 188 NWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLH-YEAGDAYTRALMRLSALFEERGE 246
NWKYMHKGIS+WLDVP+EALA RIAAVGT SRPLLH E+GD YT AL RLS +++ RGE
Sbjct: 186 NWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGE 245
Query: 247 AYANASA 253
AY ASA
Sbjct: 246 AYTKASA 252
>AT4G39540.3 | Symbols: SK2 | shikimate kinase 2 |
chr4:18378561-18380253 FORWARD LENGTH=308
Length = 308
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/255 (52%), Positives = 174/255 (68%), Gaps = 20/255 (7%)
Query: 19 IGRIPTCSFNLSRDQPLKLRGSIYSAKLHSSKIHRRRIASM--------EVACSYDNLPA 70
+ R S+N R+ K RGS+ + R R+ ++ + D +
Sbjct: 6 VQRFQYSSWNDLRNFEGKPRGSLRYNTQRIKEDKRFRVVALTLDKRRDHRLRSVSDKNSS 65
Query: 71 STLESGSR-RAPLDDEL-ILKNRSQEIQPYLNGRCIYLV--------GMMGSGKTTVGKI 120
+ LE+GS +P D+E ILK +++E++PYLNGR +YL+ GMMGSGKTTVGKI
Sbjct: 66 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLLNSFLVNALGMMGSGKTTVGKI 125
Query: 121 MSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMM-HRHIVSTG 179
M++ LGY F D D L+E+ + G SVA+IF +GES FR+KETEAL KLS+M H+ +VSTG
Sbjct: 126 MARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTG 185
Query: 180 GGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLH-YEAGDAYTRALMRLS 238
GGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT SRPLLH E+GD YT AL RLS
Sbjct: 186 GGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLS 245
Query: 239 ALFEERGEAYANASA 253
+++ RGEAY ASA
Sbjct: 246 TIWDARGEAYTKASA 260
>AT3G26900.3 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 |
chr3:9912314-9914424 REVERSE LENGTH=280
Length = 280
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 81 PLDDELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYEFCDSDALVEEEV 140
P+D ++K ++ +I P L G I+LVG+ S KT GK++++ L Y + DSD L+ E
Sbjct: 72 PID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAA 128
Query: 141 GGNSVADIFNLYGESFFRDKETEALHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWL 200
GGN A E F++ ETE L +LS M R +V G GAV N + GIS+W+
Sbjct: 129 GGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWI 188
Query: 201 DVPVEALAQ 209
DVP++ A+
Sbjct: 189 DVPLDITAK 197
>AT3G26900.2 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 |
chr3:9912314-9914424 REVERSE LENGTH=280
Length = 280
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 81 PLDDELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYEFCDSDALVEEEV 140
P+D ++K ++ +I P L G I+LVG+ S KT GK++++ L Y + DSD L+ E
Sbjct: 72 PID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAA 128
Query: 141 GGNSVADIFNLYGESFFRDKETEALHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWL 200
GGN A E F++ ETE L +LS M R +V G GAV N + GIS+W+
Sbjct: 129 GGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWI 188
Query: 201 DVPVEALAQ 209
DVP++ A+
Sbjct: 189 DVPLDITAK 197
>AT3G26900.1 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 |
chr3:9912314-9914424 REVERSE LENGTH=280
Length = 280
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 81 PLDDELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYEFCDSDALVEEEV 140
P+D ++K ++ +I P L G I+LVG+ S KT GK++++ L Y + DSD L+ E
Sbjct: 72 PID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAA 128
Query: 141 GGNSVADIFNLYGESFFRDKETEALHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWL 200
GGN A E F++ ETE L +LS M R +V G GAV N + GIS+W+
Sbjct: 129 GGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWI 188
Query: 201 DVPVEALAQ 209
DVP++ A+
Sbjct: 189 DVPLDITAK 197