Miyakogusa Predicted Gene

Lj0g3v0093719.2
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0093719.2 Non Chatacterized Hit- tr|I3SSP1|I3SSP1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.02,0,SHIKIMTKNASE,Shikimate kinase; P-loop containing
nucleoside triphosphate hydrolases,NULL; no descrip,CUFF.5301.2
         (253 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21940.4 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93...   269   1e-72
AT2G21940.5 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93...   268   3e-72
AT2G21940.2 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93...   268   3e-72
AT2G21940.1 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93...   268   3e-72
AT2G21940.3 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:93...   268   3e-72
AT4G39540.2 | Symbols: SK2, ATSK2 | shikimate kinase 2 | chr4:18...   254   3e-68
AT4G39540.1 | Symbols: SK2, ATSK2 | shikimate kinase 2 | chr4:18...   254   3e-68
AT4G39540.3 | Symbols: SK2 | shikimate kinase 2 | chr4:18378561-...   246   1e-65
AT3G26900.3 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | ...   100   9e-22
AT3G26900.2 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | ...   100   9e-22
AT3G26900.1 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | ...   100   9e-22

>AT2G21940.4 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
           chr2:9351106-9352881 FORWARD LENGTH=304
          Length = 304

 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 165/201 (82%), Gaps = 2/201 (0%)

Query: 53  RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
           +RR  S  V+CS +N   + LE+GS   P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57  QRRAVSPAVSCSDNNSSGALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 114

Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
           GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF  +GE+FFR KET+AL KLS  +
Sbjct: 115 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 174

Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
           + +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+ 
Sbjct: 175 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 234

Query: 233 ALMRLSALFEERGEAYANASA 253
           A  RLSA+++ERGEAY NA+A
Sbjct: 235 AFKRLSAIWDERGEAYTNANA 255


>AT2G21940.5 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
           chr2:9351106-9352881 FORWARD LENGTH=303
          Length = 303

 Score =  268 bits (685), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)

Query: 53  RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
           +RR  S  V+CS DN  ++ LE+GS   P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57  QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113

Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
           GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF  +GE+FFR KET+AL KLS  +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173

Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
           + +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+ 
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233

Query: 233 ALMRLSALFEERGEAYANASA 253
           A  RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254


>AT2G21940.2 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
           chr2:9351106-9352881 FORWARD LENGTH=303
          Length = 303

 Score =  268 bits (685), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)

Query: 53  RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
           +RR  S  V+CS DN  ++ LE+GS   P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57  QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113

Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
           GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF  +GE+FFR KET+AL KLS  +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173

Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
           + +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+ 
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233

Query: 233 ALMRLSALFEERGEAYANASA 253
           A  RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254


>AT2G21940.1 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
           chr2:9351106-9352881 FORWARD LENGTH=303
          Length = 303

 Score =  268 bits (685), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)

Query: 53  RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
           +RR  S  V+CS DN  ++ LE+GS   P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57  QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113

Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
           GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF  +GE+FFR KET+AL KLS  +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173

Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
           + +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+ 
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233

Query: 233 ALMRLSALFEERGEAYANASA 253
           A  RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254


>AT2G21940.3 | Symbols: SK1, ATSK1 | shikimate kinase 1 |
           chr2:9351106-9352622 FORWARD LENGTH=276
          Length = 276

 Score =  268 bits (684), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 166/201 (82%), Gaps = 3/201 (1%)

Query: 53  RRRIASMEVACSYDNLPASTLESGSRRAPLDDELILKNRSQEIQPYLNGRCIYLVGMMGS 112
           +RR  S  V+CS DN  ++ LE+GS   P D++ ILK +++E++PYLNGR +YLVGMMGS
Sbjct: 57  QRRAVSPAVSCS-DNNSSALLETGSV-YPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGS 113

Query: 113 GKTTVGKIMSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMMH 172
           GKTTVGK+MSKVLGY F D D L+E+ + G SVA+IF  +GE+FFR KET+AL KLS  +
Sbjct: 114 GKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173

Query: 173 RHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDAYTR 232
           + +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLLH E+GDAY+ 
Sbjct: 174 QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV 233

Query: 233 ALMRLSALFEERGEAYANASA 253
           A  RLSA+++ERGEAY NA+A
Sbjct: 234 AFKRLSAIWDERGEAYTNANA 254


>AT4G39540.2 | Symbols: SK2, ATSK2 | shikimate kinase 2 |
           chr4:18378561-18380253 FORWARD LENGTH=300
          Length = 300

 Score =  254 bits (649), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 136/247 (55%), Positives = 175/247 (70%), Gaps = 12/247 (4%)

Query: 19  IGRIPTCSFNLSRDQPLKLRGSIYSAKLHSSKIHRRRIASMEVACSYDNL--------PA 70
           + R    S+N  R+   K RGS+        +  R R+ ++ +    D+          +
Sbjct: 6   VQRFQYSSWNDLRNFEGKPRGSLRYNTQRIKEDKRFRVVALTLDKRRDHRLRSVSDKNSS 65

Query: 71  STLESGSR-RAPLDDEL-ILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYE 128
           + LE+GS   +P D+E  ILK +++E++PYLNGR +YLVGMMGSGKTTVGKIM++ LGY 
Sbjct: 66  ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 125

Query: 129 FCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMM-HRHIVSTGGGAVMRPI 187
           F D D L+E+ + G SVA+IF  +GES FR+KETEAL KLS+M H+ +VSTGGGAV+RPI
Sbjct: 126 FFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPI 185

Query: 188 NWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLH-YEAGDAYTRALMRLSALFEERGE 246
           NWKYMHKGIS+WLDVP+EALA RIAAVGT SRPLLH  E+GD YT AL RLS +++ RGE
Sbjct: 186 NWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGE 245

Query: 247 AYANASA 253
           AY  ASA
Sbjct: 246 AYTKASA 252


>AT4G39540.1 | Symbols: SK2, ATSK2 | shikimate kinase 2 |
           chr4:18378561-18380253 FORWARD LENGTH=300
          Length = 300

 Score =  254 bits (649), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 136/247 (55%), Positives = 175/247 (70%), Gaps = 12/247 (4%)

Query: 19  IGRIPTCSFNLSRDQPLKLRGSIYSAKLHSSKIHRRRIASMEVACSYDNL--------PA 70
           + R    S+N  R+   K RGS+        +  R R+ ++ +    D+          +
Sbjct: 6   VQRFQYSSWNDLRNFEGKPRGSLRYNTQRIKEDKRFRVVALTLDKRRDHRLRSVSDKNSS 65

Query: 71  STLESGSR-RAPLDDEL-ILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYE 128
           + LE+GS   +P D+E  ILK +++E++PYLNGR +YLVGMMGSGKTTVGKIM++ LGY 
Sbjct: 66  ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 125

Query: 129 FCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMM-HRHIVSTGGGAVMRPI 187
           F D D L+E+ + G SVA+IF  +GES FR+KETEAL KLS+M H+ +VSTGGGAV+RPI
Sbjct: 126 FFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPI 185

Query: 188 NWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLH-YEAGDAYTRALMRLSALFEERGE 246
           NWKYMHKGIS+WLDVP+EALA RIAAVGT SRPLLH  E+GD YT AL RLS +++ RGE
Sbjct: 186 NWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGE 245

Query: 247 AYANASA 253
           AY  ASA
Sbjct: 246 AYTKASA 252


>AT4G39540.3 | Symbols: SK2 | shikimate kinase 2 |
           chr4:18378561-18380253 FORWARD LENGTH=308
          Length = 308

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/255 (52%), Positives = 174/255 (68%), Gaps = 20/255 (7%)

Query: 19  IGRIPTCSFNLSRDQPLKLRGSIYSAKLHSSKIHRRRIASM--------EVACSYDNLPA 70
           + R    S+N  R+   K RGS+        +  R R+ ++         +    D   +
Sbjct: 6   VQRFQYSSWNDLRNFEGKPRGSLRYNTQRIKEDKRFRVVALTLDKRRDHRLRSVSDKNSS 65

Query: 71  STLESGSR-RAPLDDEL-ILKNRSQEIQPYLNGRCIYLV--------GMMGSGKTTVGKI 120
           + LE+GS   +P D+E  ILK +++E++PYLNGR +YL+        GMMGSGKTTVGKI
Sbjct: 66  ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLLNSFLVNALGMMGSGKTTVGKI 125

Query: 121 MSKVLGYEFCDSDALVEEEVGGNSVADIFNLYGESFFRDKETEALHKLSMM-HRHIVSTG 179
           M++ LGY F D D L+E+ + G SVA+IF  +GES FR+KETEAL KLS+M H+ +VSTG
Sbjct: 126 MARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTG 185

Query: 180 GGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLLH-YEAGDAYTRALMRLS 238
           GGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT SRPLLH  E+GD YT AL RLS
Sbjct: 186 GGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLS 245

Query: 239 ALFEERGEAYANASA 253
            +++ RGEAY  ASA
Sbjct: 246 TIWDARGEAYTKASA 260


>AT3G26900.3 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 |
           chr3:9912314-9914424 REVERSE LENGTH=280
          Length = 280

 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 81  PLDDELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYEFCDSDALVEEEV 140
           P+D   ++K ++ +I P L G  I+LVG+  S KT  GK++++ L Y + DSD L+ E  
Sbjct: 72  PID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAA 128

Query: 141 GGNSVADIFNLYGESFFRDKETEALHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWL 200
           GGN  A       E  F++ ETE L +LS M R +V  G GAV    N   +  GIS+W+
Sbjct: 129 GGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWI 188

Query: 201 DVPVEALAQ 209
           DVP++  A+
Sbjct: 189 DVPLDITAK 197


>AT3G26900.2 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 |
           chr3:9912314-9914424 REVERSE LENGTH=280
          Length = 280

 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 81  PLDDELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYEFCDSDALVEEEV 140
           P+D   ++K ++ +I P L G  I+LVG+  S KT  GK++++ L Y + DSD L+ E  
Sbjct: 72  PID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAA 128

Query: 141 GGNSVADIFNLYGESFFRDKETEALHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWL 200
           GGN  A       E  F++ ETE L +LS M R +V  G GAV    N   +  GIS+W+
Sbjct: 129 GGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWI 188

Query: 201 DVPVEALAQ 209
           DVP++  A+
Sbjct: 189 DVPLDITAK 197


>AT3G26900.1 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 |
           chr3:9912314-9914424 REVERSE LENGTH=280
          Length = 280

 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 81  PLDDELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSKVLGYEFCDSDALVEEEV 140
           P+D   ++K ++ +I P L G  I+LVG+  S KT  GK++++ L Y + DSD L+ E  
Sbjct: 72  PID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAA 128

Query: 141 GGNSVADIFNLYGESFFRDKETEALHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWL 200
           GGN  A       E  F++ ETE L +LS M R +V  G GAV    N   +  GIS+W+
Sbjct: 129 GGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWI 188

Query: 201 DVPVEALAQ 209
           DVP++  A+
Sbjct: 189 DVPLDITAK 197