Miyakogusa Predicted Gene

Lj0g3v0089719.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089719.1 Non Chatacterized Hit- tr|I1I8C2|I1I8C2_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,31.23,0.000000000000007,no description,NULL; coiled-coil,NULL;
WLM,WLM; UBX-RELATED,NULL; seg,NULL,CUFF.4938.1
         (596 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: WLM (Inter...   437   e-122
AT1G55915.1 | Symbols:  | zinc ion binding | chr1:20907663-20909...    68   2e-11

>AT5G35690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: WLM
           (InterPro:IPR013536), PUB domain (InterPro:IPR018997),
           PUG domain (InterPro:IPR006567); BEST Arabidopsis
           thaliana protein match is: zinc ion binding
           (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:13865027-13868117 REVERSE LENGTH=603
          Length = 603

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/344 (61%), Positives = 273/344 (79%), Gaps = 8/344 (2%)

Query: 47  MQPESSLLDISVTWRGKKFVVQTNAGASVKDLGHELQKLTNIKEDTMRFIVPKISGRTSK 106
           M+     + +S+ W+G K+ V+ ++GAS+KDLG+EL+KLT +  +T+R IVP+++ + S 
Sbjct: 6   MEDSGKKIRVSLLWKGNKYSVEIDSGASLKDLGYELRKLTGVTSETLRLIVPRLNEKGSS 65

Query: 107 LLAPFSTEHALLSLQETFIAEARSIIMMGVSTNEVEEVLQNAKANLRIAGFEDEEKRLKQ 166
           L+ PFS EH+ LSLQE+ I E ++I MMGVS  EVE VL+ A +++RI GFE+EE+RLKQ
Sbjct: 66  LMLPFSDEHSSLSLQESNIIEDKTIRMMGVSEEEVEGVLKEAVSDMRILGFEEEERRLKQ 125

Query: 167 RISHGSRLSLKLPQGPYIFREFRTLELPGVELNPPPSEALKRMHLLAADPGIVAIMNKHR 226
           + S+ S  S+KLPQG YIF +FRTL+LPG+ELNPPPS ALKRMH+LAADPGI+A+MNKHR
Sbjct: 126 KKSYVSSASIKLPQGTYIFGDFRTLQLPGIELNPPPSAALKRMHMLAADPGIIAVMNKHR 185

Query: 227 WSVGIMTELPPIGYVGVSPKCLLGFNKNQGEEISLRLRTDDLKGFRKYQSIKKTLLHELA 286
           W VGIMTEL P+GYVGVSP+CLLGFNKNQGEEISLRLRTDDLKGFRKYQSIKKTLLHELA
Sbjct: 186 WRVGIMTELAPVGYVGVSPRCLLGFNKNQGEEISLRLRTDDLKGFRKYQSIKKTLLHELA 245

Query: 287 HMVHSAHDANFYALDKQLNEEAASLDWTRSTGHTLGGVRISDIYDDDFIPKSSN--VPQK 344
           HMV++ HD  FYALD QLN+EA SLDWT+S GHTL G +  +  D++      N  V Q+
Sbjct: 246 HMVYTEHDEKFYALDSQLNKEAESLDWTKSRGHTLNGTKFINDDDEEDYFFDENETVSQR 305

Query: 345 LGGNRTDQL-SARESSVAADYQRVANVSSDKTGESEVNQQLDPD 387
           LGGN++D L +ARESSVAA Y+R+++ S      S+++++ DPD
Sbjct: 306 LGGNQSDNLGNARESSVAAAYRRLSHTSV-----SKLSEEPDPD 344


>AT1G55915.1 | Symbols:  | zinc ion binding | chr1:20907663-20909429
           FORWARD LENGTH=404
          Length = 404

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 11/125 (8%)

Query: 189 RTLELPGVELNPPPSEALKRMHLLAADPGIVAIMNKHRWSVGIMTELPPIGYVGVSPKCL 248
           +  E+  ++  P   EA K +  +A    +  IM + +W V +++E  P      +P+ L
Sbjct: 11  KVWEIKALKRKPREDEARKILEKVANQ--VQPIMTRRKWRVKLLSEFCP-----TNPR-L 62

Query: 249 LGFNKNQGEEISLRLR--TDDLKGFRKYQSIKKTLLHELAHMVHSAHDANFYALDKQLNE 306
           LG N N+G ++ LRLR    DL  F  Y  I  T+LHEL H  H  H+A+FY L  +L +
Sbjct: 63  LGVNVNRGVQVKLRLRRVNHDLD-FLSYHEILDTMLHELCHNAHGPHNASFYKLWDELRK 121

Query: 307 EAASL 311
           E   L
Sbjct: 122 ECEEL 126