Miyakogusa Predicted Gene

Lj0g3v0088129.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0088129.1 Non Chatacterized Hit- tr|I3SXF4|I3SXF4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,89.13,0.00000000000001,UMP1,Proteasome maturation factor
UMP1,CUFF.4712.1
         (56 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67250.1 | Symbols:  | Proteasome maturation factor UMP1 | ch...    57   3e-09
AT5G38660.2 | Symbols: APE1 | acclimation of photosynthesis to  ...    55   7e-09
AT5G38650.1 | Symbols:  | Proteasome maturation factor UMP1 | ch...    55   1e-08

>AT1G67250.1 | Symbols:  | Proteasome maturation factor UMP1 |
          chr1:25163808-25164967 REVERSE LENGTH=141
          Length = 141

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 8  EASKTIPHQIGGVHNDLLLFGIHGVKSDIVDAHPLESS 45
          E+ K I H+IGGV ND L FG+HGVKS+I+ +HPLESS
Sbjct: 2  ESEKKIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESS 39


>AT5G38660.2 | Symbols: APE1 | acclimation of photosynthesis to
           environment | chr5:15471208-15475497 REVERSE LENGTH=431
          Length = 431

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/38 (60%), Positives = 31/38 (81%)

Query: 8   EASKTIPHQIGGVHNDLLLFGIHGVKSDIVDAHPLESS 45
           E+ K I H+IGG+ ND L FG+HGVKSDI+ +HPLE++
Sbjct: 292 ESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETA 329


>AT5G38650.1 | Symbols:  | Proteasome maturation factor UMP1 |
          chr5:15471208-15472699 REVERSE LENGTH=141
          Length = 141

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 31/38 (81%)

Query: 8  EASKTIPHQIGGVHNDLLLFGIHGVKSDIVDAHPLESS 45
          E+ K I H+IGG+ ND L FG+HGVKSDI+ +HPLE++
Sbjct: 2  ESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETA 39