Miyakogusa Predicted Gene

Lj0g3v0086919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0086919.1 Non Chatacterized Hit- tr|A2C053|A2C053_PROM1
Uncharacterized integral membrane protein
OS=Prochloro,33.17,3e-18,seg,NULL; DUF2301,Protein of unknown function
DUF2301,CUFF.4643.1
         (296 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28140.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   305   3e-83

>AT1G28140.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF2301, transmembrane
           (InterPro:IPR019275); Has 140 Blast hits to 140 proteins
           in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10;
           Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes -
           3 (source: NCBI BLink). | chr1:9833029-9834390 REVERSE
           LENGTH=280
          Length = 280

 Score =  305 bits (780), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 183/249 (73%), Gaps = 1/249 (0%)

Query: 46  IKIGSVRYKALGDNRQGSLDDTAVYEGIYGPWTIDSSDVREGILYRSGLVTXXXXXXXXX 105
           ++ G    KA+ ++ QG++D T VY+G+YGPWTID +DV+E ILYRSGLVT         
Sbjct: 31  VRRGRANVKAVSNSSQGAVDGT-VYKGVYGPWTIDQADVKEVILYRSGLVTAAASFVAAS 89

Query: 106 XXXFLPSNSALCDALKQNXXXXXXXXXXXXXXXXXXIHIYVSEIKRALQALWGLGILGSA 165
              FLP +S L + +KQN                  IHIYV+EIKR LQALW LG +GS 
Sbjct: 90  SAAFLPGDSWLSETIKQNHDLFYFVGASGLGLSLFLIHIYVTEIKRTLQALWALGFVGSF 149

Query: 166 IAYINLALPANENLIQCVVDNPPAVWLVGPLFAALTGLVFKEGLCYGKLEAGVLTFVIPT 225
             Y  LA PA +NL+  VVD+P AVW VGPLFA+LTGLVFKEGLCYGKLEAG+LTF+IP+
Sbjct: 150 ATYAALARPAGDNLVHYVVDHPSAVWFVGPLFASLTGLVFKEGLCYGKLEAGLLTFIIPS 209

Query: 226 VLLGHMTGLMDDGAKLTLLASWMALFVIFAGRKFTQPIKDDIGDKSVFMFNSLSDDERKT 285
           VLLGH++GLM+D  KL LL +WMALF++FAGRKFTQPIKDDIGDKSVF F SLSDDE+K 
Sbjct: 210 VLLGHLSGLMNDEVKLVLLGTWMALFLVFAGRKFTQPIKDDIGDKSVFTFMSLSDDEKKA 269

Query: 286 LIEKLEQQK 294
           ++EKLEQ+K
Sbjct: 270 IVEKLEQEK 278