Miyakogusa Predicted Gene

Lj0g3v0067819.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067819.3 tr|Q17BC3|Q17BC3_AEDAE AAEL005005-PA OS=Aedes
aegypti GN=AAEL005005 PE=4 SV=1,34.41,0.0003,F-box domain,F-box
domain, cyclin-like; F-box-like,NULL; no description,NULL; seg,NULL;
CCAAT-BOX DN,CUFF.3220.3
         (147 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54480.1 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protei...   180   3e-46
AT3G54480.2 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protei...   134   3e-32

>AT3G54480.1 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protein 5
           | chr3:20170883-20173325 REVERSE LENGTH=274
          Length = 274

 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/96 (85%), Positives = 88/96 (91%)

Query: 37  INNLDDGCLMHIFSFLPPIPDRFNTALVCHRWNYLACHPRLWLRVDRSVKDLSQPGVFPN 96
           +NNLDDGCLMHI SFL PIPDR+NTALVCHRW YLACHPRLWLRVDR VKDLSQPGVF N
Sbjct: 35  LNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLN 94

Query: 97  IETAVSASRPGDTILIAAGGSHHTSNIQIKKPLCLV 132
           IE+AVSA+RPGDTILI AGG++  SNIQIKKPLCLV
Sbjct: 95  IESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLV 130


>AT3G54480.2 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protein 5
           | chr3:20172518-20173325 REVERSE LENGTH=118
          Length = 118

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 64/69 (92%)

Query: 37  INNLDDGCLMHIFSFLPPIPDRFNTALVCHRWNYLACHPRLWLRVDRSVKDLSQPGVFPN 96
           +NNLDDGCLMHI SFL PIPDR+NTALVCHRW YLACHPRLWLRVDR VKDLSQPGVF N
Sbjct: 35  LNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLN 94

Query: 97  IETAVSASR 105
           IE+AVSA+R
Sbjct: 95  IESAVSAAR 103