Miyakogusa Predicted Gene

Lj0g3v0063409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0063409.1 Non Chatacterized Hit- tr|I1L7B1|I1L7B1_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,87.1,0.0000007,
,CUFF.2880.1
         (51 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35970.1 | Symbols:  | P-loop containing nucleoside triphosph...    49   6e-07

>AT5G35970.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:14119060-14123078
           REVERSE LENGTH=961
          Length = 961

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 2   LDEFPEAAGTEVSTIDSFQGLEADVVILSMLWRLHL 37
           LD+FP A G EV+TIDSFQG EAD VI+SM+   +L
Sbjct: 852 LDDFPVADGVEVATIDSFQGREADAVIISMVRSNNL 887