Miyakogusa Predicted Gene

Lj0g3v0061939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0061939.1 tr|B9HD36|B9HD36_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560198 PE=4
SV=1,44.79,2e-17,Fasciclin,FAS1 domain; Four repeated domains in the
Fasciclin I fam,FAS1 domain; FAS1 domain,FAS1 do,CUFF.2777.1
         (253 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16920.1 | Symbols:  | Fasciclin-like arabinogalactan family ...   142   3e-34
AT5G26730.1 | Symbols:  | Fasciclin-like arabinogalactan family ...    86   3e-17

>AT5G16920.1 | Symbols:  | Fasciclin-like arabinogalactan family
           protein | chr5:5567084-5567854 FORWARD LENGTH=256
          Length = 256

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 129/233 (55%), Gaps = 26/233 (11%)

Query: 5   VFLVTXXXXXXISSVTPTDNQNLLAATEEMQRANYFTFVMLVKM-SQPDTRLEGNVTFLM 63
           V +VT       S   P +N  L  A EEM++ANYF+FVML+ M    + R   NVTFLM
Sbjct: 15  VIIVTSSTRAQKSPHVP-NNHELSIAIEEMEKANYFSFVMLINMLPSVNPRFLANVTFLM 73

Query: 64  PNDRMLANMNL--QEGYVSSFLLRHSIPSPLLFGTLEQFPTGTTIPTSLPNCMLRISNNG 121
           P D+ L+  N+  Q+  V+ FLLRHSIPS LLF  L   P G+ +P+SLP+  L ISN G
Sbjct: 74  PKDKTLSTSNIINQQDSVTEFLLRHSIPSSLLFEHLNLIPNGSIVPSSLPHYTLEISNGG 133

Query: 122 RRNFALNNVKIISPNLCVAGSSIRCHGIDGVI-SESCI---SVYNNYSAPLAPSPIPCPN 177
           R N+ LNNVKIIS N+C  G SI+CHGIDG++ S S +   S  NN++ P     I CP+
Sbjct: 134 RSNYFLNNVKIISRNICSLG-SIKCHGIDGILQSPSTVDDDSPRNNHTLPF----ISCPS 188

Query: 178 ITDPSYKAXXXXXXXXXXXXXXXRDNLSPP---TLIAPNPTEANIRPEKSGSP 227
             + S +                  N S P   TL AP P  + I   KS SP
Sbjct: 189 SHNNSDQ----------NSHNNSDQNSSRPADHTLTAPPPVSSPISQPKSDSP 231


>AT5G26730.1 | Symbols:  | Fasciclin-like arabinogalactan family
           protein | chr5:9300422-9301990 FORWARD LENGTH=268
          Length = 268

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 82/136 (60%), Gaps = 5/136 (3%)

Query: 23  DNQN---LLAATEEMQRANYFTFVMLVK-MSQPDTRLEGNVTFLMPNDRMLANMNLQEGY 78
           DN N   L++A  +M+R +Y  FV+L++ ++  +     ++TFLMP+D  +++ ++    
Sbjct: 111 DNYNQTDLISAMTDMRRQSYNGFVILLRFLNDTNYFRNTDITFLMPSDNDISHADITPES 170

Query: 79  VSSFLLRHSIPSPLLFGTLEQFPTGTTIPTSLPNCMLRISNNGRRNFALNNVKIISPNLC 138
           + +F+L+H+IP+ L+   +  FP  T +P S  + M  I+ +G     +NN +I++PN+C
Sbjct: 171 LETFILKHTIPAWLMINHMLHFPNRTLVPCSFSDRMFTITKSGGSGIYVNNARIVTPNVC 230

Query: 139 VAGSSIRCHGIDGVIS 154
              S I CHGI  VIS
Sbjct: 231 -QNSRISCHGISDVIS 245