Miyakogusa Predicted Gene

Lj6g3v2006410.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v2006410.3 tr|Q0E463|Q0E463_ORYSJ Os02g0134300 protein
OS=Oryza sativa subsp. japonica GN=Os02g0134300 PE=4
SV=,80.28,2e-18,seg,NULL; Zinc beta-ribbon,NULL; Elf1,Transcription
elongation factor 1; SUBFAMILY NOT NAMED,NULL; U,CUFF.60462.3
         (216 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66461 similar to UniRef100_A7P1V1 Cluster: Chromosome...   291   9e-79

>gnl|LJGI|TC66461 similar to UniRef100_A7P1V1 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (96%)
          Length = 616

 Score =  291 bits (147), Expect = 9e-79
 Identities = 198/215 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggaaagaggaaggcaaaggcgaagccagctccgaagaaacgaatggataagcttgac 60
           |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 119 atgggaaagaggaaggcaaaagcaaagccagctccaaagaaacgaatggataagcttgac 178

                                                                       
Query: 61  actgtcttcagttgccctttctgcaatcatggctctagtgttgaatgccgcattgacatg 120
           ||||| || || |||||||||||||||||||||   |||||||| |||||||| ||||||
Sbjct: 179 actgtgtttagctgccctttctgcaatcatggcagcagtgttgagtgccgcatagacatg 238

                                                                       
Query: 121 aagaacttgataggggaagcttcttgcgggatatgccaagagagctttagcactaacatc 180
           |||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||
Sbjct: 239 aagaacttgataggggaagcttcttgtgggatctgtcaagagagctttagcactaccatc 298

                                              
Query: 181 acagctttatctgaggcaatagacatatacagtga 215
           |||||||| || |||||||||||||||||||||||
Sbjct: 299 acagctttgtcggaggcaatagacatatacagtga 333