Miyakogusa Predicted Gene
- Lj6g3v1370730.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1370730.1 tr|C7J245|C7J245_ORYSJ Os05g0523100 protein
OS=Oryza sativa subsp. japonica GN=Os05g0523100 PE=4
SV=,29.91,5e-19,Rep_fac-A_C,Replication factor A, C-terminal;
seg,NULL; Nucleic acid-binding proteins,Nucleic acid-b,CUFF.60001.1
(762 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72622 394 e-109
gnl|LJGI|TC82317 333 9e-91
gnl|LJGI|TC71292 86 4e-16
gnl|LJGI|BP083798 58 8e-08
gnl|LJGI|BP082045 56 3e-07
>gnl|LJGI|TC72622
Length = 563
Score = 394 bits (199), Expect = e-109
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 345 agagatcccaccagtgctgagaaatttgtgtaaacaaacactaatttttgagataaagct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagatcccaccagtgctgagaaatttgtgtaaacaaacactaatttttgagataaagct 60
Query: 405 ctcagatcacaacttgaaggaggggtcacagaactacacagtaacacgcactttcatacc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcagatcacaacttgaaggaggggtcacagaactacacagtaacacgcactttcatacc 120
Query: 465 aaccagccttatagaagaacaatctacccacaaatcagtgcaaaaggacccaatatcacc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccagccttatagaagaacaatctacccacaaatcagtgcaaaaggacccaatatcacc 180
Query: 525 acaacaaatatcatcagat 543
|||||||||||||||||||
Sbjct: 181 acaacaaatatcatcagat 199
Score = 252 bits (127), Expect = 3e-66
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 636 tggacaagatggcattacttccatcgatgaagaacaaattttgattcaaaccttaaggac 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tggacaagatggcattacttccatcgatgaagaacaaattttgattcaaaccttaaggac 351
Query: 696 acccacatctaagagaaccagagatggcaacggaagcacgacaaggaagcggaaaagaat 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acccacatctaagagaaccagagatggcaacggaagcacgacaaggaagcggaaaagaat 411
Query: 756 aaccaga 762
|||||||
Sbjct: 412 aaccaga 418
>gnl|LJGI|TC82317
Length = 879
Score = 333 bits (168), Expect = 9e-91
Identities = 283/320 (88%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 221 ggttcaagatacaattggaagtgtcagatgaaactgcagctgcaaaactgacattatttg 280
|||||||||||||||| ||||||||||| ||| |||||||||||||||| |||| ||||
Sbjct: 166 ggttcaagatacaattacaagtgtcagattaaattgcagctgcaaaactgtcattgtttg 225
Query: 281 acagagatgcccaacaactcttgcacactacagcatcagaactcttgcaacatggcagta 340
||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 226 acagagacggccaacaactcttgcacactacagcatcagaactcttacaacatgtcagta 285
Query: 341 acaaagagatcccaccagtgctgagaaatttgtgtaa-acaaacactaatttttgagata 399
||| |||| |||||| ||||||| ||||||||||||| | ||| || ||||||||||||
Sbjct: 286 acacagagctcccacaagtgctgtgaaatttgtgtaataagaactcttatttttgagata 345
Query: 400 aagctctcagatcacaacttgaaggaggggtcacagaactacacagtaacacgcactttc 459
| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 346 aggctctcagatcacaacttgaaggaggggtccaagaactacacagtaacatgcactttt 405
Query: 460 ataccaaccagccttatagaagaacaatctacccacaaatcagtgcaaaaggacccaata 519
|||||| |||| ||| | |||||||||| ||||| ||| || | |||||||| ||||
Sbjct: 406 gtaccaaacagctttacaaaagaacaatcaacccagaaaacaatacaaaaggagtcaatg 465
Query: 520 tcaccacaacaaatatcatc 539
||||||||||||||||||||
Sbjct: 466 tcaccacaacaaatatcatc 485
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 663 tgaagaacaaattttgattcaaaccttaag 692
||||||||||||||||||||||| ||||||
Sbjct: 606 tgaagaacaaattttgattcaaagcttaag 635
>gnl|LJGI|TC71292
Length = 514
Score = 85.7 bits (43), Expect = 4e-16
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 661 gatgaagaacaaattttgattcaaaccttaaggacacccacatctaagagaacca 715
||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 294 gatgaagaacaaattttgattcaaaccttgaggacaaacacatctaagagaacca 348
>gnl|LJGI|BP083798
Length = 336
Score = 58.0 bits (29), Expect = 8e-08
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 642 agatggcattacttccatcgatgaagaacaaattttgattcaaaccttaaggacacccac 701
||||| |||||| ||| | || |||||||||||||| ||||||| ||||| |||| |||
Sbjct: 200 agatgacattacatcctttgacgaagaacaaattttaattcaaagcttaatgacaaacac 141
Query: 702 atctaagagaaccagag 718
|||||||| ||| ||||
Sbjct: 140 atctaagaaaactagag 124
>gnl|LJGI|BP082045
Length = 332
Score = 56.0 bits (28), Expect = 3e-07
Identities = 48/54 (88%), Gaps = 3/54 (5%)
Strand = Plus / Minus
Query: 661 gatgaagaacaaattttgattcaaaccttaaggacacccacatctaagagaacc 714
||||||| ||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 174 gatgaagtacaaattttgattcaaaccttgagga---acacatctaagagaacc 124