Miyakogusa Predicted Gene
- Lj6g3v1105010.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1105010.1 Non Chatacterized Hit- tr|I3T952|I3T952_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.54,0,seg,NULL;
Snf7,Snf7; CHARGED MULTIVESICULAR BODY PROTEIN 2A (CHROMATIN-MODIFYING
PROTEIN 2A)(CHMP2A),NODE_33197_length_914_cov_28.466084.path2.1
(663 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81699 similar to UniRef100_UPI0000162818 Cluster: SNF... 1314 0.0
gnl|LJGI|TC60361 similar to UniRef100_A7Q1Q7 Cluster: Chromosome... 96 3e-19
gnl|LJGI|TC79332 similar to UniRef100_A8QXD4 Cluster: Polyprotei... 72 5e-12
>gnl|LJGI|TC81699 similar to UniRef100_UPI0000162818 Cluster: SNF7 family protein;
n=1; Arabidopsis thaliana|Rep: SNF7 family protein -
Arabidopsis thaliana, partial (91%)
Length = 968
Score = 1314 bits (663), Expect = 0.0
Identities = 663/663 (100%)
Strand = Plus / Plus
Query: 1 atgaacttgaacatcttcaagaagaaaacctcacccaaagaagctctgcggagtagtaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atgaacttgaacatcttcaagaagaaaacctcacccaaagaagctctgcggagtagtaag 136
Query: 61 agagaaatggctgttgcaacaagaggaattgaaaaggagatagcatcacttcagatggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 agagaaatggctgttgcaacaagaggaattgaaaaggagatagcatcacttcagatggag 196
Query: 121 gaaaggaaattggtggcagagattaaacgaacagccaaaaccggaaatgaggctgccact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaaaggaaattggtggcagagattaaacgaacagccaaaaccggaaatgaggctgccact 256
Query: 181 agaatattggctcgtcaacttgttaggctacgccaacagataaccaatttgcagggaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaatattggctcgtcaacttgttaggctacgccaacagataaccaatttgcagggaagt 316
Query: 241 cgtgctcagatcaggggtgttgcaactcacacacaggcattatatgcaagtacttcaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cgtgctcagatcaggggtgttgcaactcacacacaggcattatatgcaagtacttcaatc 376
Query: 301 tctacaggtatgaagggtgccactaaagcaatggtggcaatgaataagcaaatggcacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctacaggtatgaagggtgccactaaagcaatggtggcaatgaataagcaaatggcacca 436
Query: 361 gcaaagcaggcgaaggtgatccaagaattccaaaagcagtcagcacaaatggacatgacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcaaagcaggcgaaggtgatccaagaattccaaaagcagtcagcacaaatggacatgacg 496
Query: 421 attgagatgatgtcagaatccatagatgaaactttagacaaagatgaagctgaggaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attgagatgatgtcagaatccatagatgaaactttagacaaagatgaagctgaggaagaa 556
Query: 481 acagaagagctcactaaccaggttcttgacgagattggagtggatattgcatcccagtta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acagaagagctcactaaccaggttcttgacgagattggagtggatattgcatcccagtta 616
Query: 541 tcttctgctccgaaaggacggattggttcaaggagtgctgaaaatgttgcgccaagacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcttctgctccgaaaggacggattggttcaaggagtgctgaaaatgttgcgccaagacca 676
Query: 601 gcagaatccaatgatgtggaagatcttgaaaagagactggcttctcttcggaggatatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcagaatccaatgatgtggaagatcttgaaaagagactggcttctcttcggaggatatga 736
Query: 661 aga 663
|||
Sbjct: 737 aga 739
>gnl|LJGI|TC60361 similar to UniRef100_A7Q1Q7 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 917
Score = 95.6 bits (48), Expect = 3e-19
Identities = 189/236 (80%)
Strand = Plus / Plus
Query: 307 ggtatgaagggtgccactaaagcaatggtggcaatgaataagcaaatggcaccagcaaag 366
|||||||| || || | ||| ||||||| ||||||||||||||||||| || ||||||
Sbjct: 401 ggtatgaaaggcgctagtaaggcaatggcagcaatgaataagcaaatggatccggcaaag 460
Query: 367 caggcgaaggtgatccaagaattccaaaagcagtcagcacaaatggacatgacgattgag 426
|| || || || || | |||||||| || || ||| | || ||||| ||||| | |||
Sbjct: 461 caagccaaagttatgctggaattccagaaacaatcaacgcagatggatatgactactgaa 520
Query: 427 atgatgtcagaatccatagatgaaactttagacaaagatgaagctgaggaagaaacagaa 486
||||||||||| |||||||||| | ||||||| ||||||||||| || || || ||
Sbjct: 521 atgatgtcagatgccatagatgatgcaatagacaatgatgaagctgaagaggagactgat 580
Query: 487 gagctcactaaccaggttcttgacgagattggagtggatattgcatcccagttatc 542
||||| || |||||||||||||| || ||||| |||||| |||| || ||||||||
Sbjct: 581 gagctgacaaaccaggttcttgatgaaattggtgtggatgttgcctcacagttatc 636
>gnl|LJGI|TC79332 similar to UniRef100_A8QXD4 Cluster: Polyprotein; n=1; Human
immunodeficiency virus 1|Rep: Polyprotein - Human
immunodeficiency virus 1, partial (4%)
Length = 1001
Score = 71.9 bits (36), Expect = 5e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 atgaacttgaacatcttcaagaagaaaacctcacccaaag 40
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 510 atgaacttgaacatcttcaagaagaaaacctcatccaaag 549