Miyakogusa Predicted Gene
- Lj6g3v0908780.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0908780.1 Non Chatacterized Hit- tr|I1N0S6|I1N0S6_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,82.09,0,DEAD,DNA/RNA
helicase, DEAD/DEAH box type, N-terminal; Helicase_C,Helicase,
C-terminal; coiled-coil,,CUFF.58465.1
(2235 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69554 similar to UniRef100_A7NST3 Cluster: Chromosome... 884 0.0
gnl|LJGI|BW596008 similar to UniRef100_Q9ZRZ8 Cluster: DEAD-box ... 163 6e-39
>gnl|LJGI|TC69554 similar to UniRef100_A7NST3 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (28%)
Length = 1209
Score = 884 bits (446), Expect = 0.0
Identities = 446/446 (100%)
Strand = Plus / Plus
Query: 1790 aggtaattagtgcccaagaagctgaagacctcaaaatgaaggaaaagaggaagcgagagc 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggtaattagtgcccaagaagctgaagacctcaaaatgaaggaaaagaggaagcgagagc 401
Query: 1850 gagagaaaaatttgcctagaaagaagcgccgaaagttggaggcggctagagagatgttgg 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gagagaaaaatttgcctagaaagaagcgccgaaagttggaggcggctagagagatgttgg 461
Query: 1910 aggacgatgagggttatgatgaaaagccagtcgaaggtaagggggcaaataagaaagaaa 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aggacgatgagggttatgatgaaaagccagtcgaaggtaagggggcaaataagaaagaaa 521
Query: 1970 aggctggaatatcacttgtcgatattgcttaccgacgggcaaaagcagtgaaggctgtca 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aggctggaatatcacttgtcgatattgcttaccgacgggcaaaagcagtgaaggctgtca 581
Query: 2030 agagggcactagattctggcaagattgtgaagaaggttaaaccgaaatctagtcattctt 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agagggcactagattctggcaagattgtgaagaaggttaaaccgaaatctagtcattctt 641
Query: 2090 cgcgaaagactccttcaaggccagaagagatgcgcgatctattccagactgagataaagg 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgcgaaagactccttcaaggccagaagagatgcgcgatctattccagactgagataaagg 701
Query: 2150 atagaaaaccaagaaaaggaggtagtggagcaggaaagaagcccaagagttcattcaaaa 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atagaaaaccaagaaaaggaggtagtggagcaggaaagaagcccaagagttcattcaaaa 761
Query: 2210 gcaagtcaaggtataagcgcaagtag 2235
||||||||||||||||||||||||||
Sbjct: 762 gcaagtcaaggtataagcgcaagtag 787
Score = 611 bits (308), Expect = e-174
Identities = 308/308 (100%)
Strand = Plus / Plus
Query: 1485 cacatttgttaccgataatgaccggtcacttttaaaaggcattgcaaagagggctggtgc 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacatttgttaccgataatgaccggtcacttttaaaaggcattgcaaagagggctggtgc 60
Query: 1545 aaagctgaaaagccgcattgttgcagagcaatctatactaaagtggtctcaaataattga 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagctgaaaagccgcattgttgcagagcaatctatactaaagtggtctcaaataattga 120
Query: 1605 tcaaatggaggaccaaattgctgaagtacttcaagaagagagggaagaaatagccctaag 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaaatggaggaccaaattgctgaagtacttcaagaagagagggaagaaatagccctaag 180
Query: 1665 gaaagctgaaatggaggccgcaaaggccgaaaacatgattgcacatagggaagagatctt 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaagctgaaatggaggccgcaaaggccgaaaacatgattgcacatagggaagagatctt 240
Query: 1725 ttcccgccccaaaagaacctggtttgtcacagagaaggagaagaagcttgttgctaaagc 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcccgccccaaaagaacctggtttgtcacagagaaggagaagaagcttgttgctaaagc 300
Query: 1785 agcaaagg 1792
||||||||
Sbjct: 301 agcaaagg 308
>gnl|LJGI|BW596008 similar to UniRef100_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA
helicase 28; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 28 - Arabidopsis thaliana
(Mouse-ear cress), partial (7%)
Length = 471
Score = 163 bits (82), Expect = 6e-39
Identities = 188/224 (83%), Gaps = 12/224 (5%)
Strand = Plus / Plus
Query: 337 cctgatcaacaagaagattatagaccggaagaagaagaggaggaagagggcaatgctggt 396
|||||||| ||||||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 243 cctgatcatcaagaagattatagaccggaagaagaagaagatga---gggcaatgctgat 299
Query: 397 gata---------acaagccttattttgcttcttctgatggaacctctttccatgctgat 447
| | ||||| ||| |||| || |||||||||||| ||||||||||||||||
Sbjct: 300 gctggcgatgacgacaagtcttttttttctccttctgatggaatctctttccatgctgat 359
Query: 448 tccttcatggagctcaatttgtctcgccctttactccgggcttgtgaggccttggggtat 507
|||||| || | ||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct: 360 tccttcttgcacctcaatttgtcacgccctttactccgggcttgtcaggccttgggctat 419
Query: 508 tctaaaccaacaccaattcaggcggcttgtataccattagcatt 551
| | ||||||||||||||||| ||||| |||||||| |||||
Sbjct: 420 attcatccaacaccaattcaggccgcttgcataccattggcatt 463
Score = 85.7 bits (43), Expect = 1e-15
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 173 cacagtctccatgggacttcgccaagtactcggaatcagtggcggaggaacacgctcgca 232
|||||||||| ||| |||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 97 cacagtctccgtggaacttcgccaagtacacggaatccgtggcggaggaatacgctcgca 156
Query: 233 gga 235
|||
Sbjct: 157 gga 159