Miyakogusa Predicted Gene
- Lj5g3v0586520.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0586520.1 tr|D5G958|D5G958_TUBMM Whole genome shotgun
sequence assembly, scaffold_161, strain Mel28 OS=Tuber
m,27.64,7e-19,RPA_C,Replication protein A, C-terminal;
tRNA_anti,Nucleic acid binding, OB-fold,
tRNA/helicase-type,CUFF.53304.1
(810 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58053 similar to UniRef100_Q7XZT4 Cluster: RPA 32kDa;... 1606 0.0
gnl|LJGI|TC61399 similar to UniRef100_Q7XZT4 Cluster: RPA 32kDa;... 224 7e-58
>gnl|LJGI|TC58053 similar to UniRef100_Q7XZT4 Cluster: RPA 32kDa; n=1; Pisum
sativum|Rep: RPA 32kDa - Pisum sativum (Garden pea),
partial (88%)
Length = 1109
Score = 1606 bits (810), Expect = 0.0
Identities = 810/810 (100%)
Strand = Plus / Plus
Query: 1 atgttctccgtcacccaattcgattcctcctccggtggcggcggtttcacctccacacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 atgttctccgtcacccaattcgattcctcctccggtggcggcggtttcacctccacacag 114
Query: 61 ctcaacgattcttcgccggcaccgcaaaaaggccgtgaatcgcagggtttggttccggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctcaacgattcttcgccggcaccgcaaaaaggccgtgaatcgcagggtttggttccggtg 174
Query: 121 acagtgaagcagatcaatgaagcctctcagtctggtgatgaaaagtcaagtttcgtgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 acagtgaagcagatcaatgaagcctctcagtctggtgatgaaaagtcaagtttcgtgatc 234
Query: 181 aacggtgtagaactcaccaatgtgacgctggttggaatggtgtttgagaaagcagagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aacggtgtagaactcaccaatgtgacgctggttggaatggtgtttgagaaagcagagaga 294
Query: 241 aacactgatgtcaattttgttttagatgatgggacagggcgaatcaaatgtcgaagatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aacactgatgtcaattttgttttagatgatgggacagggcgaatcaaatgtcgaagatgg 354
Query: 301 atcaatgatgctttcgacacacaggaagtggaagaaataatgaatggtatgtatgttcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atcaatgatgctttcgacacacaggaagtggaagaaataatgaatggtatgtatgttcgt 414
Query: 361 gttaatgggcatttgaaaagcttccaaggtgtaaggcaggttgcagccttttctgtcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gttaatgggcatttgaaaagcttccaaggtgtaaggcaggttgcagccttttctgtcagg 474
Query: 421 cctgtggtgaattttgatgagatcccttttcacttcattgattgcatacatcaccacctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cctgtggtgaattttgatgagatcccttttcacttcattgattgcatacatcaccacctc 534
Query: 481 cgctccaaattaaagatggagggaaccatatctacagatcctcctgcatcagactcatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cgctccaaattaaagatggagggaaccatatctacagatcctcctgcatcagactcatct 594
Query: 541 ttgaaaactcctgtcagaaacacatctaatggatctcaggcaccatcatcaactcctgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttgaaaactcctgtcagaaacacatctaatggatctcaggcaccatcatcaactcctgca 654
Query: 601 tatgcacaatatggtgtggatggactcaaggattgtgataaattggttattgactatctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tatgcacaatatggtgtggatggactcaaggattgtgataaattggttattgactatctg 714
Query: 661 cagcagcattcagacatgtcggatgatcggggaatacatgctaacgagctatctcgagag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cagcagcattcagacatgtcggatgatcggggaatacatgctaacgagctatctcgagag 774
Query: 721 ctcaagcttccattggacaagatcatgttatcgctgaggactcttggagatgatggttta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctcaagcttccattggacaagatcatgttatcgctgaggactcttggagatgatggttta 834
Query: 781 gtatactccaccatagatgacttccattac 810
||||||||||||||||||||||||||||||
Sbjct: 835 gtatactccaccatagatgacttccattac 864
>gnl|LJGI|TC61399 similar to UniRef100_Q7XZT4 Cluster: RPA 32kDa; n=1; Pisum
sativum|Rep: RPA 32kDa - Pisum sativum (Garden pea),
partial (80%)
Length = 1150
Score = 224 bits (113), Expect = 7e-58
Identities = 306/369 (82%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 103 cagggtttggttccggtgacagtgaagcagatcaatgaagcctctcagtctggtgatgaa 162
|||||||||||||| || ||||||| |||||| | ||| || ||||| |||||||||||
Sbjct: 204 cagggtttggttccagtcacagtgaggcagataagtgaggcttctcactctggtgatgac 263
Query: 163 aagtcaagtttcgtgatcaacggtgtagaactcaccaatgtgacgctggttggaatggtg 222
||||| | |||||| ||||||||||| | ||||||||||| || ||||||||||||||
Sbjct: 264 aagtccaatttcgtaatcaacggtgtcggtctcaccaatgtaaccttggttggaatggtg 323
Query: 223 tttgagaaagcagagagaaacactgatgtcaattttgttttagatgatgggacagggcga 282
|||||||||| |||| ||||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 324 tttgagaaagttgagaaaaacactgaagttaactttgttttagatgatggaacaggaaga 383
Query: 283 atcaaatgtcgaagatggatcaatgatgctttcgacacacagg-aagtggaagaaataat 341
||||||||| | |||||| | ||||| ||| || || ||| || |||| |||||
Sbjct: 384 atcaaatgtaggagatgggtgaatgaaacttatgatacgaaggaaaatggatcaaataca 443
Query: 342 gaatggtatgtatgttcgtgttaatgggcatttgaaaagcttccaaggtgtaaggcaggt 401
| | |||||||||||||| || |||| |||||||| ||||| |||||||||||||| |
Sbjct: 444 ggacggtatgtatgttcgcctttatggccatttgaagagctttcaaggtgtaaggcaact 503
Query: 402 tgcagccttttctgtcaggcctgtggtgaattttgatgagatcccttttcacttcattga 461
| ||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 504 cgttgccttctctgtgaggcctgtgacaaattttgatgagataccttttcacttcattga 563
Query: 462 ttgcataca 470
|||||||||
Sbjct: 564 ttgcataca 572
Score = 89.7 bits (45), Expect = 3e-17
Identities = 120/145 (82%)
Strand = Plus / Plus
Query: 611 atggtgtggatggactcaaggattgtgataaattggttattgactatctgcagcagcatt 670
||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct: 698 atggtgtggatcaactcaagggctgtgataaattggtttttgactatctgcagcagcact 757
Query: 671 cagacatgtcggatgatcggggaatacatgctaacgagctatctcgagagctcaagcttc 730
| |||| ||| ||||| | |||||||||| | | || |||||| | |||| | ||||
Sbjct: 758 cggacacgtcagatgaaagtggaatacatgttgatgaactatctttacagcttagacttc 817
Query: 731 cattggacaagatcatgttatcgct 755
||||||| ||||||| || ||||||
Sbjct: 818 cattggataagatcaggtcatcgct 842