Miyakogusa Predicted Gene

Lj4g3v2789350.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2789350.1 tr|D8RYR6|D8RYR6_SELML LHC-related protein
OS=Selaginella moellendorffii GN=SEP2_1 PE=4
SV=1,32.62,0.00000000000003,Chloroa_b-bind,Chlorophyll A-B binding
protein,CUFF.51671.1
         (591 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66375 similar to UniRef100_A7PL17 Cluster: Chromosome...  1172   0.0  
gnl|LJGI|AV424346 UniRef100_A7PL19 Cluster: Chromosome chr7 scaf...   478   e-134

>gnl|LJGI|TC66375 similar to UniRef100_A7PL17 Cluster: Chromosome chr7 scaffold_20,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr7 scaffold_20, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (90%)
          Length = 2029

 Score = 1172 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggcatcagtttcgcgtgttgcgcactgcaacctccggcaggcaaaacccgcggcggct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 atggcatcagtttcgcgtgttgcgcactgcaacctccggcaggcaaaacccgcggcggct 1893

                                                                        
Query: 61   cgaccgagaaaccagcccggtccggttcagctctcgatcccccgggccaaaccggtggaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 cgaccgagaaaccagcccggtccggttcagctctcgatcccccgggccaaaccggtggaa 1833

                                                                        
Query: 121  tccgatcaaaccggaaactcaaacatcgtcctgcaaccgcgcctctgcactctcagatcc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 tccgatcaaaccggaaactcaaacatcgtcctgcaaccgcgcctctgcactctcagatcc 1773

                                                                        
Query: 181  tacggtcccgatcgagtcatcaacaagaacgccatcaacctcgccgatgacgtgtcaccg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 tacggtcccgatcgagtcatcaacaagaacgccatcaacctcgccgatgacgtgtcaccg 1713

                                                                        
Query: 241  ttcttcgccacgctctccgaccacatcgaaagctccaagaagagccaggatttcgaaatc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 ttcttcgccacgctctccgaccacatcgaaagctccaagaagagccaggatttcgaaatc 1653

                                                                        
Query: 301  atctccggtcgactcgccatgatggtgtttgcggcgacggtgacggtggagatcgtgacg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 atctccggtcgactcgccatgatggtgtttgcggcgacggtgacggtggagatcgtgacg 1593

                                                                        
Query: 361  gggagctcggtgtttaggaagatggacgtggcggggattgcggaggccggtggggtgtgt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 gggagctcggtgtttaggaagatggacgtggcggggattgcggaggccggtggggtgtgt 1533

                                                                        
Query: 421  ttggctgcggtgactctggcggcggtttttgcttggttttcgagtgcccgaaacagagtt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 ttggctgcggtgactctggcggcggtttttgcttggttttcgagtgcccgaaacagagtt 1473

                                                                        
Query: 481  ggtagcatcttcaatttgagctacaatgccttcattgattccctcattgaccaaatcgtt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 ggtagcatcttcaatttgagctacaatgccttcattgattccctcattgaccaaatcgtt 1413

                                                               
Query: 541  gatggtttgttctatgaaagtgaacctagtgattggtctgatgaactctga 591
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 gatggtttgttctatgaaagtgaacctagtgattggtctgatgaactctga 1362


>gnl|LJGI|AV424346 UniRef100_A7PL19 Cluster: Chromosome chr7 scaffold_20, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr7 scaffold_20, whole genome shotgun sequence - Vitis
           vinifera (Grape), partial (12%)
          Length = 427

 Score =  478 bits (241), Expect = e-134
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcatcagtttcgcgtgttgcgcactgcaacctccggcaggcaaaacccgcggcggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atggcatcagtttcgcgtgttgcgcactgcaacctccggcaggcaaaacccgcggcggct 242

                                                                       
Query: 61  cgaccgagaaaccagcccggtccggttcagctctcgatcccccgggccaaaccggtggaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cgaccgaaaaaccagcccggtccggttcagctctcgatcccccgggccaaaccggtggaa 302

                                                                       
Query: 121 tccgatcaaaccggaaactcaaacatcgtcctgcaaccgcgcctctgcactctcagatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tccgatcaaaccggaaactcaaacatcgtcctgcaaccgcgcctctgcactctcagatcc 362

                                                                       
Query: 181 tacggtcccgatcgagtcatcaacaagaacgccatcaacctcgccgatgacgtgtcaccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tacggtcccgatcgagtcatcaacaagaacgccatcaacctcgccgatgacgtgtcaccg 422

                
Query: 241 ttctt 245
           |||||
Sbjct: 423 ttctt 427