Miyakogusa Predicted Gene
- Lj4g3v2290300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2290300.1 Non Chatacterized Hit- tr|F6HHK2|F6HHK2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46.15,0.00003,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
POLYGALACTURONASE,Glycoside hydrolase, family 28; P,gene.g56612.t1.1
(1107 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69749 weakly similar to UniRef100_A8VPP7 Cluster: Pol... 1332 0.0
gnl|LJGI|TC73914 weakly similar to UniRef100_A7Q8G4 Cluster: Chr... 1076 0.0
gnl|LJGI|BP030183 weakly similar to UniRef100_A7R8L6 Cluster: Ch... 496 e-139
>gnl|LJGI|TC69749 weakly similar to UniRef100_A8VPP7 Cluster: Pollen-specific
polygalacturonase; n=1; Brassica rapa subsp.
campestris|Rep: Pollen-specific polygalacturonase -
Brassica rapa subsp. campestris, partial (30%)
Length = 759
Score = 1332 bits (672), Expect = 0.0
Identities = 727/739 (98%), Gaps = 5/739 (0%)
Strand = Plus / Plus
Query: 357 cagaaaccccagcagtcttttcttcatggattgcagcaatgtcatggtacagaacattaa 416
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 7 cagaaaccccagcagtcttttcttcatggatngcagcaatgtcgtggtacagaacattaa 66
Query: 417 atcactgaatcccaaagggtttcacatgttcgttactaaatgtacaaatgtcagattacg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 atcactgaatcccaaagggtttcacatgttcgttactaaatgtacaaatgtcagattacg 126
Query: 477 caaacttaagcttattgcacctgagaccagccccaacactgatggcattcatatcagcag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 caaacttaagcttattgcacctgagaccagccccaacactgatggcattcatatcagcag 186
Query: 537 ctccatcaatgtgattatagccagaaacaccattcaaactggagatgattgtatctctat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctccatcaatgtgattatagccagaaacaccattcaaactggagatgattgtatctctat 246
Query: 597 gattcagggatctgaaaatgttttcatcaacaggcttaagtgtggccctgggcatggtat 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gattcagggatctgaaaatgttttcatcaacaggcttaagtgtggccctgggcatggtat 306
Query: 657 cagtattggtagccttggcaagtatgcggaggagcgagaggtgaaaggcattcgtatcaa 716
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagtattggtagccttggaaagtatgcggaggagcgagaggtgaaaggcattcgtatcaa 366
Query: 717 gaacagcgcgttgattggcacaacaaatgggctcagaatcaaatcatggccagacaaata 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaacagcgcgttgattggcacaacaaatgggctcagaatcaaatcatggccagacaaata 426
Query: 777 tggaggtgcagcatcagagatcagcttcagtaacattaccatggaaaatgttaaaaatcc 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tggaggtgcagcatcagagatcagcttcagtaacattaccatggaaaatgttaaaaatcc 486
Query: 837 catcatcattgaccaggagtaccaatgctctccaaactgccagaagaagccatcattggt 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catcatcattgaccaggagtaccaatgctctccaaactgccagaagaagccatcattggt 546
Query: 897 gaggattagggatattcactttgcaaatgttaagggaactacaacttcaccaattgcagt 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gaggattagggatattcactttgcaaatgttaagggaactacaacttcaccaattgcagt 606
Query: 957 ggacttcagatgcagtaagctgtacccatg-catgggaattacactcagagacattgacc 1015
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 607 ggacttcagatgcagtaagctgtacccatgccatgggaattacactcacaaacattgacc 666
Query: 1016 tgaagcttggaactgctcctacaa-ccgct-agatgttccaatattaagcctgtctat-g 1072
|||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||| |
Sbjct: 667 tgaagcttggaactgctcctacaacccgctaaaatgttccaatattaaacctgtctatgg 726
Query: 1073 gctt-aggggtggtgaatc 1090
|||| ||||||||||||||
Sbjct: 727 gcttaaggggtggtgaatc 745
>gnl|LJGI|TC73914 weakly similar to UniRef100_A7Q8G4 Cluster: Chromosome chr5
scaffold_64, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_64, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (23%)
Length = 786
Score = 1076 bits (543), Expect = 0.0
Identities = 546/547 (99%)
Strand = Plus / Plus
Query: 561 aaacaccattcaaactggagatgattgtatctctatgattcagggatctgaaaatgtttt 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacaccattcaaactggagatgattgtatctctatgattcagggatctgaaaatgtttt 60
Query: 621 catcaacaggcttaagtgtggccctgggcatggtatcagtattggtagccttggcaagta 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 catcaacaggcttaagtgtggccctgggcatggtatcagtattggtagccttggaaagta 120
Query: 681 tgcggaggagcgagaggtgaaaggcattcgtatcaagaacagcgcgttgattggcacaac 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcggaggagcgagaggtgaaaggcattcgtatcaagaacagcgcgttgattggcacaac 180
Query: 741 aaatgggctcagaatcaaatcatggccagacaaatatggaggtgcagcatcagagatcag 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatgggctcagaatcaaatcatggccagacaaatatggaggtgcagcatcagagatcag 240
Query: 801 cttcagtaacattaccatggaaaatgttaaaaatcccatcatcattgaccaggagtacca 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttcagtaacattaccatggaaaatgttaaaaatcccatcatcattgaccaggagtacca 300
Query: 861 atgctctccaaactgccagaagaagccatcattggtgaggattagggatattcactttgc 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgctctccaaactgccagaagaagccatcattggtgaggattagggatattcactttgc 360
Query: 921 aaatgttaagggaactacaacttcaccaattgcagtggacttcagatgcagtaagctgta 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatgttaagggaactacaacttcaccaattgcagtggacttcagatgcagtaagctgta 420
Query: 981 cccatgcatgggaattacactcagagacattgacctgaagcttggaactgctcctacaac 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cccatgcatgggaattacactcagagacattgacctgaagcttggaactgctcctacaac 480
Query: 1041 cgctagatgttccaatattaagcctgtctatggcttaggggtggtgaatccaccaccttg 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctagatgttccaatattaagcctgtctatggcttaggggtggtgaatccaccaccttg 540
Query: 1101 catataa 1107
|||||||
Sbjct: 541 catataa 547
>gnl|LJGI|BP030183 weakly similar to UniRef100_A7R8L6 Cluster: Chromosome undetermined
scaffold_2720, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_2720,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (20%)
Length = 470
Score = 496 bits (250), Expect = e-139
Identities = 250/250 (100%)
Strand = Plus / Plus
Query: 1 atgagttttggagccaaacctgatggtgtctttgactctactcaggctttcatgacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgagttttggagccaaacctgatggtgtctttgactctactcaggctttcatgacagca 280
Query: 61 tggcaaactgtgtgccattcacctgcgccaggcagaatattggttcctgctgggagattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tggcaaactgtgtgccattcacctgcgccaggcagaatattggttcctgctgggagattc 340
Query: 121 ttggtttcttcaatgttttttcaagggccatgcctttctccacatccagtaacactgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttggtttcttcaatgttttttcaagggccatgcctttctccacatccagtaacactgcaa 400
Query: 181 gttgaaggcactgttttggctagtgccgatctttctgagtttgaaaacggtgactggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gttgaaggcactgttttggctagtgccgatctttctgagtttgaaaacggtgactggctc 460
Query: 241 atgttccagc 250
||||||||||
Sbjct: 461 atgttccagc 470